Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211541g00004 ATGGAATCCGGAGTGGTGGGTGAGGGAGAGAAGGGGCTAACCGAGTTCAAGTCAGAAATCGCGGTGCTTACTAAGGTTAGACACAGGCATTTGGTAGCACTCCATGGACACTGCTTGGATGGACGTGAGGGGCATCTTGTCTATGAATACATGCCTCAGGGACCGCTTAGCAGGCATCTGTTTGATTGGAAGGAGGAAGGGATAAAGCCTTTGGAGTGGAAGCAAAGGCTTATTATAGCTTTGGATGTTGCTAGAGGTGTTGAATACCTTCATAATTTGGCACAACAAATCTTCATCCATAGGGATTTGAAGCCATCAAACATCTTGCTTGGGGATGATATGCGAGCTAAAGTTTCGGATTTTGGATTGGTTCGGCTCGCCCCTGAAGGACAAACATCGTTCGAGACTAGACTTGCTGGAACTTTTGGATACCTAGCTCCAGAGTATGCAGCGACCGGACGAGTTACAAAAAAGGTTGATGTGTATAGCTTTGGGGTGATTCTCATGGAGATGATAACCGGAAGGAAAGCGATAGATAACAGCCAGCCGGAAGAGAACATCCACCTTGTTACATGGTTCCGGAGGAAGTTGATTGAGAAAGATTCGTTTAAGAAGGTCATCGACCCGGTAATTGATACTCTGGATGAAGAAACCTTAGCCAGTATTACCACCGTTGCAGAATTGGCTGCTCACTGCTGCGCTAGGGAGCCGTATCAGCGGCCGGACATGGGCCATGTGGTGAACGTGTTAGCGCCTCTTGTTGATGTATGGAAACCAACGGAGCTAAATGGCGATGACATGTTTGGGATTGATTTGGACATGAGTTTGCCACAAGCATTGAGCAAGTGGCAGGCCTTTGAAGGAACTAGCACCATGGATATCTCATCTTCATCTTCATCATTGCTTACTAGTGCAGAGAATACACAAACAAGCATACCTACTCGCCCTGCCGGATTTGCAGATTCCTTTACTTCTTCTGATGGACGATAA 990 0.4697 MESGVVGEGEKGLTEFKSEIAVLTKVRHRHLVALHGHCLDGREGHLVYEYMPQGPLSRHLFDWKEEGIKPLEWKQRLIIALDVARGVEYLHNLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQTSFETRLAGTFGYLAPEYAATGRVTKKVDVYSFGVILMEMITGRKAIDNSQPEENIHLVTWFRRKLIEKDSFKKVIDPVIDTLDEETLASITTVAELAAHCCAREPYQRPDMGHVVNVLAPLVDVWKPTELNGDDMFGIDLDMSLPQALSKWQAFEGTSTMDISSSSSSLLTSAENTQTSIPTRPAGFADSFTSSDGR 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211541g00004 329 Gene3D Transferase(Phosphotransferase) domain 1 52 263 - -
Stsc211541g00004 329 Gene3D Phosphorylase Kinase; domain 1 5 51 - -
Stsc211541g00004 329 MobiDBLite consensus disorder prediction 300 329 - -
Stsc211541g00004 329 Pfam Protein kinase domain 14 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211541g00004 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 98 110 IPR008271 GO:0004672|GO:0006468
Stsc211541g00004 329 ProSiteProfiles Protein kinase domain profile. 1 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211541g00004 329 PANTHER OSJNBA0070M12.3 PROTEIN 1 329 - -
Stsc211541g00004 329 SMART serkin_6 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211541g00004 329 SUPERFAMILY Protein kinase-like (PK-like) 10 259 IPR011009 -
Stsc211541g00004 329 FunFam receptor protein kinase TMK1 51 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211541g00004 Stsc-Chr211541 17715 20208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211541g00004 9 253 Glycoside Hydrolase AT3G07070 44.309 1.12e-62 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Stsc211541g00004 Pkinase 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211541g00004 K00924 - gmx:100776064 537.724