Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211541g00003 ATGTCAATGTGTTTTCCTTCATTTTCATCATCATGTCTCTGTATAATAATAGCAATAGTATTGTTGGTGGGTTTAGGAGAAGAAGAAGAAGTAGCAAAAGCTCAGTTTATTAACCAAAGAAATAATCATAATCATAATAAACCCCTCCCTTATTTGACAGTTACTGTTGATCCTTCTGGCCATGCTAATTTTTCTACAATCCAATCTGCAATTGATTCAGTCCCTTCCAACAACAAGCATTGGATTTCAATCAATGTCAAAGCTGGTACTTACAGGGAAAAGTTGAAGATTCCAGATGATAAGCCATTCATAATACTAAAAGGAGAGGGAAAAAGGAACACTGTTGTTGATTGGGATGATCATGCTACTACTTCACAGAGCCCTACCTTCTCAACAATGGCTGACAATATTGTTGTCAAATCCATCAGTTTTAGGAATTCATACAATAATCCAAGGAATAGTAATCCCATTGCACGTGCAGTAGCTGCAATGGTAAGTGGGGACAAGTCAACCTTTTACCATGTTGGCTTCTTTGGTCTTCAAGATACTCTATGGGATGATCAAGGAAGACATTACTACAAGTTTTGTACCATTCAAGGTGCTGTTGATTTTATCTTTGGTGCTGGCCAGTCATTATATGAGGGATGTAGCATATCTGTTATTGGAGCTTCCCTAGGTCCTGGCAATGTGGGTTTTATCACAGCACAAGGGAGAACAAATCCAAATGATGCAAATGGGTTTGTGTTCAAAAATTCCAGAGTCTTTGGAAATGGAACAACATTCTTGGGAAGGCCGTGGAGGGGTTATGCTAGAGTTCTTTTCTATAACACAAGCATGTCTAACATTATTCTACCAACTGGTTGGGATCCATGGAGTTTCCATGATCACGAGGAACGTATAACTTTTGCGGAGTATGATAATTTCGGACCGGGTTCTAACATTTCGTTGCGAGTGAAGTGGACTAAGAAACTTAGTTTAGCAACAATTAATTCAATGACTAGCACTAATTTCATTGACACTGAAGGTTGGCTTAAGGCACAACAAGGCTTCTAA 1053 0.3865 MSMCFPSFSSSCLCIIIAIVLLVGLGEEEEVAKAQFINQRNNHNHNKPLPYLTVTVDPSGHANFSTIQSAIDSVPSNNKHWISINVKAGTYREKLKIPDDKPFIILKGEGKRNTVVDWDDHATTSQSPTFSTMADNIVVKSISFRNSYNNPRNSNPIARAVAAMVSGDKSTFYHVGFFGLQDTLWDDQGRHYYKFCTIQGAVDFIFGAGQSLYEGCSISVIGASLGPGNVGFITAQGRTNPNDANGFVFKNSRVFGNGTTFLGRPWRGYARVLFYNTSMSNIILPTGWDPWSFHDHEERITFAEYDNFGPGSNISLRVKWTKKLSLATINSMTSTNFIDTEGWLKAQQGF 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211541g00003 350 Gene3D - 51 349 IPR012334 -
Stsc211541g00003 350 ProSitePatterns Pectinesterase signature 2. 198 207 IPR033131 -
Stsc211541g00003 350 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 43 345 - -
Stsc211541g00003 350 FunFam Pectinesterase 50 348 - -
Stsc211541g00003 350 Pfam Pectinesterase 54 340 IPR000070 GO:0030599|GO:0042545
Stsc211541g00003 350 SUPERFAMILY Pectin lyase-like 51 346 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211541g00003 Stsc-Chr211541 10594 13394 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211541g00003 53 297 Carbohydrate Esterase AT2G19150 46.341 1.38e-77 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211541g00003 - - aprc:113870328 456.832