Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211541g00002 ATGACAGGACCAAGGAATTTCATTAAAGTGATCGAGGAAACCGGGTCCGGCCATTTCAAGGCAGAGATATATCCTCAAGAAGGAGGCCAAAGGGATACACATAGACGCAAGGAAATTGAGCAGTATTACAGATCTTTCTTGTGGAGTTTGGTGTTTACTATTCCTGTCTTTCTGACCTCTATGGTTCTTATGTATATCCCTGGAATTAAGGGTGTGCTTGATGCCAAAGTTGTCAATATGCTTACTGTGGGGAAGGTTGTAAGGTTGGTGCTCGCAACGCCAGTTCAGTTTGTTATAGGCCGGCGATTTTACTCTGGTTCCTACAAGTCATTGCGTCGCGGCTCTGCTAACATGGATGTCTTGATTGCATTGGGAACGAATGCAGCATATTTTTATTCGCTCTACTCTGTTGCTAGAGCAGCCACCTCTAAGGATTTCAAGGGTACTGATTTCTTTGAGACTAGTGCTATGCTTATCTCATTTATTCTTCTTGGAAAGTATCTTGAGATTTTGGCTAAGGGAAAGACATCAAATGCGATTGCGAAGCTCATGAACCTGACACCAGATACAGCTATATTGTTAACATTGGACAGTGAAGGAAATGTCATTAGTGAGGAAGAAATTGACAGCAGGTTGGTTCAGAAGAACGATGTGATCAAAATCATCCCTGGTGCTAAGGTAGCTTCGGATGGATTTGTCATATGGGGCCAGAGTCATGTGAATGAGAGCATGATAACGGGCGAGGCGCGGCCAGTGGCAAAGAGGAAAGGGGATACTGTTATTGGAGGAACTGTGAATGAGAATGGAGTCTTGCATATCAAGGCAACACGAGTCGGATCAGAAAGTGCGCTTTCGCAGATTGTTCAACTAGTTGAGTCAGCTCAAATGGCCAAGGCACCTGTGCAGAAGCTTGCAGACCGCATTTCGAAGTACTTTGTGCCTCTGGTCATCTTAATCTCATTTACAACATGGTTTGCTTGGTTTTTGGCTGGAAAATTCAATGCTTACCCAAAGTCCTGGATACCATCTTCTATGGATAGCTTTCAGCTTGCTTTGCAGTTTGGGATATCTGTTATGGTGATAGCTTGCCCTTGTGCTTTAGGCTTAGCAACGCCGACTGCGGTTATGGTTGGCACTGGAGTTGGTGCTTCTCAGGGTGTGCTAATTAAAGGAGGGCAAGCATTAGAAAGTGCTCATAAGGTGAACTGCATTGTTTTTGACAAGACAGGTACTCTAACTATTGGGAAACCTGTGGTAGTTAATACAAGACTAATAAAAAATATGTTACTCCAAGATTTCTATGAGCTTGTAGCTGCAACTGAGGTGAATAGCGAGCATCCGCTGGCTAAGGCCGTTGTTGAATATGCAAAAAAATTTAAAGATGAGGAGAATCCTTCATGGCCAGAAGCACAGGATTTTGTTTCCATTACAGGACATGGAGTGAAGGCCACGGTTCGAAACCAAGAAATAATTGTTGGTAACAAGAGTTTAATGGCAAGCCATAGTATTGCAGTTCCTAGTGATGCTGAAGATATGCTTGCTGAAGCTGAAGCAATGGCTCAAACTGGGATTTTAGTATCTATCAATGGAGAAGTAATTGGGGTTTTAGCAATATCTGATCCACTGAAACCAGATGCTGAAGAAGTCATTTCTATTCTCAAGTCCATGAAAATTAGGAGCATTATGGTTACAGGGGACAATTTGGGTACTGCAAATTCTATTGCAAGGGAAGTTGGAATAGAGACTGTAATTGCTGAGGCCAAACCAGAGCAAAAAGCAGAGAAAGTGAAGGAACTTCAGGCATCTGGCCACACAGTGGCTATGGTAGGGGATGGCATCAACGATTCGCCTGCGCTTGTGGCAGCCGATGTGGGAATGGCGATAGGTGCCGGAACAGACATTGCCATTGAGGCAGCTGACATTGTCTTAATGAAGAGCAACTTGGAGGATGTCATAACTGCCATTGATCTTTCTAGAAAGACATTTTCGCGTATTCGCTTGAATTACTGCTGGGCTTTAGGATATAACCTTCTTGGCATACCAATAGCTGCTGGAGCTCTATTCCCTTCTACAAGATTTCGATTGCCTCCATGGATTGCAGGGGTTGCCATGGCTGCATCTTCTGTTAGTGTTGTTTGTTGTTCTCTGTTGCTTAAATATTACAGAAGACCAAGGAAGCTAGATAACCTTGAGATAAGAGGAATAAGGATTGAATCATCAAGTGATACCATGCATGGCAATTGA 2244 0.434 MTGPRNFIKVIEETGSGHFKAEIYPQEGGQRDTHRRKEIEQYYRSFLWSLVFTIPVFLTSMVLMYIPGIKGVLDAKVVNMLTVGKVVRLVLATPVQFVIGRRFYSGSYKSLRRGSANMDVLIALGTNAAYFYSLYSVARAATSKDFKGTDFFETSAMLISFILLGKYLEILAKGKTSNAIAKLMNLTPDTAILLTLDSEGNVISEEEIDSRLVQKNDVIKIIPGAKVASDGFVIWGQSHVNESMITGEARPVAKRKGDTVIGGTVNENGVLHIKATRVGSESALSQIVQLVESAQMAKAPVQKLADRISKYFVPLVILISFTTWFAWFLAGKFNAYPKSWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVVVNTRLIKNMLLQDFYELVAATEVNSEHPLAKAVVEYAKKFKDEENPSWPEAQDFVSITGHGVKATVRNQEIIVGNKSLMASHSIAVPSDAEDMLAEAEAMAQTGILVSINGEVIGVLAISDPLKPDAEEVISILKSMKIRSIMVTGDNLGTANSIAREVGIETVIAEAKPEQKAEKVKELQASGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYCWALGYNLLGIPIAAGALFPSTRFRLPPWIAGVAMAASSVSVVCCSLLLKYYRRPRKLDNLEIRGIRIESSSDTMHGN 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211541g00002 747 Gene3D - 412 488 IPR023299 GO:0000166
Stsc211541g00002 747 Gene3D - 489 540 IPR023299 GO:0000166
Stsc211541g00002 747 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 736 - -
Stsc211541g00002 747 ProSitePatterns E1-E2 ATPases phosphorylation site. 407 413 IPR018303 -
Stsc211541g00002 747 SFLD p-type atpase 387 661 IPR044492 -
Stsc211541g00002 747 NCBIfam heavy metal translocating P-type ATPase 118 718 IPR027256 GO:0006812|GO:0016020|GO:0019829
Stsc211541g00002 747 Gene3D - 372 666 IPR023214 -
Stsc211541g00002 747 PRINTS P-type cation-transporting ATPase superfamily signature 534 545 - -
Stsc211541g00002 747 PRINTS P-type cation-transporting ATPase superfamily signature 405 419 - -
Stsc211541g00002 747 PRINTS P-type cation-transporting ATPase superfamily signature 556 566 - -
Stsc211541g00002 747 PRINTS P-type cation-transporting ATPase superfamily signature 609 628 - -
Stsc211541g00002 747 PRINTS P-type cation-transporting ATPase superfamily signature 241 255 - -
Stsc211541g00002 747 PRINTS P-type cation-transporting ATPase superfamily signature 632 644 - -
Stsc211541g00002 747 SFLD C1.7: P-type atpase like 387 661 - -
Stsc211541g00002 747 NCBIfam HAD-IC family P-type ATPase 158 691 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211541g00002 747 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 696 IPR023298 -
Stsc211541g00002 747 FunFam Copper-transporting ATPase 1, putative 173 295 - -
Stsc211541g00002 747 PRINTS Copper-transporting ATPase signature 103 122 - -
Stsc211541g00002 747 PRINTS Copper-transporting ATPase signature 155 174 - -
Stsc211541g00002 747 PRINTS Copper-transporting ATPase signature 314 328 - -
Stsc211541g00002 747 PRINTS Copper-transporting ATPase signature 586 603 - -
Stsc211541g00002 747 PRINTS Copper-transporting ATPase signature 175 193 - -
Stsc211541g00002 747 PRINTS Copper-transporting ATPase 1 signature 101 126 - -
Stsc211541g00002 747 PRINTS Copper-transporting ATPase 1 signature 46 67 - -
Stsc211541g00002 747 PRINTS Copper-transporting ATPase 1 signature 81 101 - -
Stsc211541g00002 747 SUPERFAMILY HAD-like 404 715 IPR036412 -
Stsc211541g00002 747 CDD P-type_ATPase_Cu-like 44 719 - -
Stsc211541g00002 747 Pfam haloacid dehalogenase-like hydrolase 401 623 - -
Stsc211541g00002 747 SUPERFAMILY Calcium ATPase, transduction domain A 205 291 IPR008250 -
Stsc211541g00002 747 Gene3D - 173 295 - -
Stsc211541g00002 747 FunFam Probable copper-transporting ATPase HMA5 512 666 - -
Stsc211541g00002 747 Pfam E1-E2 ATPase 204 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211541g00002 Stsc-Chr211541 3996 9165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211541g00002 1 738 Primary Pumps ATPases AT1G63440 82.749 0.0 1277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211541g00002 K17686 - gmx:100810141 1267.29