Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211541g00001 GTGTTGTTTGTGTTGGTAAATTCAGGATTTGTAGAGTTAGTTAATGGTCAATTCTACCGAAGAGTTGGAGACAAAATCCTTCCATTCAGAAACATTGTTGTTGATTCTTCAGGGCATGGCAACTTCTCTACCATTCAATCTGCAATTGATTCTGTCCCTTCCAACAATAAGTATTGGGTTTCAATCAAAGTCAAGGCTGGTATTTACAGGGAGAAAGTGAAGATTCCAAATGATAAGCCATACATAATATTGAAGGGAGATGGAAAGAGGAAAACGTGGGTAGAATGGAGTGACCATAATGCAACTGCTCAGAGCCCCACGTTACAAACCATGGCTGATAATATCATCGTCAAATCAATCTCTTTTAGGAATTCATACAACAATCCAATAAATAAGAACCCCAAGGTTCCTGCAGTAGCTGCAATGATTAGTGGAGACAAGTCTTATTTTTATAGAGTTGGTTTCTTTGGGTTGCAAGACACTTTATGGGATGATCAAGGAAGGCATTACTACAAGCTTTGTACAATTCAAGGTGCCATTGATTTCATCTTTGGTGCTGGCCAGTCTTTGTTTGAGAGGTGTAGCATATCTGTTATTGGAGGGGCCTTAGAAGCAGGGTTTGTAGGTTATATAACAGCACAAGGGAGAACAAATCCAAATGATTCAAATGGGTTTGTGTTTAAGAATTGCAATGTCTTTGGAAATGGCACAACTTTCTTGGGAAGGCCTTGGAGACCTTATGCTAGAGTTCTTTTCTACAACACAAGTATGTCCAACGTTGTACAACCTTCTGGTTGGGAGCCATGGAAATTCTTTCAACACGAGAATCACATTACATTTGCAGAGTATGGCAATTTCGGACCAGGTTCTGATACTTCGAAACGAGTAAATTGGATTAAAAAGTTGGATTTAGTGACGGTTAATATGATGACAAGCATGAATTTCATAGACTCCCAAGAATGGCTTGAACAGAATGAACAGTTCTGA 987 0.3911 VLFVLVNSGFVELVNGQFYRRVGDKILPFRNIVVDSSGHGNFSTIQSAIDSVPSNNKYWVSIKVKAGIYREKVKIPNDKPYIILKGDGKRKTWVEWSDHNATAQSPTLQTMADNIIVKSISFRNSYNNPINKNPKVPAVAAMISGDKSYFYRVGFFGLQDTLWDDQGRHYYKLCTIQGAIDFIFGAGQSLFERCSISVIGGALEAGFVGYITAQGRTNPNDSNGFVFKNCNVFGNGTTFLGRPWRPYARVLFYNTSMSNVVQPSGWEPWKFFQHENHITFAEYGNFGPGSDTSKRVNWIKKLDLVTVNMMTSMNFIDSQEWLEQNEQF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211541g00001 328 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 30 323 - -
Stsc211541g00001 328 ProSitePatterns Pectinesterase signature 2. 176 185 IPR033131 -
Stsc211541g00001 328 Gene3D - 29 327 IPR012334 -
Stsc211541g00001 328 FunFam Pectinesterase 28 326 - -
Stsc211541g00001 328 Pfam Pectinesterase 31 318 IPR000070 GO:0030599|GO:0042545
Stsc211541g00001 328 SUPERFAMILY Pectin lyase-like 30 323 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211541g00001 Stsc-Chr211541 962 3924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211541g00001 30 270 Carbohydrate Esterase AT2G19150 47.521 3.07e-76 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211541g00001 - - gmx:100819252 492.271