Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211539g00010 ATGGGCCTCTCGAGTCTGCCATCACCATCCGAAGGAGTGCTATGTGCAATTCTTGTTAACACTGTCCTCTCAGTCTCCATATTCAAAGGCATTGTTAAGACAATCCTTCACATTGTTGGCATCCACCTCTCATCATCCCCTTCGCCAAACGCCACCTCCCCGGGCCATCAACCATCCGAGTCATTCGAGTTCCTCCTTGGCCACCATCAACCATCCGACTCATTCGAGTTCCTCCTTAGCCCCTCGGAGACATACATCGAAGAGTTTAGGAGCCGGACGCCTACAATCCGGTTCGACAGCGTGTTCTCCTGCGAAAAACCTGAGCATGACTGCTGTGTGTGCCTCTCCCAATTTGAGCCAGAATCCGAGATAAACCGCCTGCCCTGCGGCCATCTCTTCCACAAAGTGTGTTTGGAGAAGTGGTTGGATTATTGGAACATCACATGCCCTCTTTGCAGGAACCCTTTGATGCCTGAAGACAATGATCAATGGCTTTTAGTAAGCAATGAATGA 513 0.5029 MGLSSLPSPSEGVLCAILVNTVLSVSIFKGIVKTILHIVGIHLSSSPSPNATSPGHQPSESFEFLLGHHQPSDSFEFLLSPSETYIEEFRSRTPTIRFDSVFSCEKPEHDCCVCLSQFEPESEINRLPCGHLFHKVCLEKWLDYWNITCPLCRNPLMPEDNDQWLLVSNE 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211539g00010 170 SUPERFAMILY RING/U-box 104 159 - -
Stsc211539g00010 170 SMART ring_2 111 152 IPR001841 -
Stsc211539g00010 170 Pfam Ring finger domain 110 153 IPR001841 -
Stsc211539g00010 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 158 IPR013083 -
Stsc211539g00010 170 SMART ringv_2 110 153 IPR011016 GO:0008270
Stsc211539g00010 170 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Stsc211539g00010 170 PANTHER - 1 160 IPR044249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211539g00010 Stsc-Chr211539 112070 114034 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211539g00010 1 162 C3H Transcription Factor Family AT2G04240 56.970 1.62e-54 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211539g00010 K16285 - gmx:100786803 249.98