Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211539g00003 ATGGGCGTGGGAGAAGGAGACAGCACAAAACCCGAACCCGAATCCAACGATGGTCATCGCCACCAAGAAGAAGATGAAGACGACGACGACGTGGAAGGAGAAGAAGAAGAAGGCGTGTCCGAGTCAAGAACAGGTATGGCATTGGGTCTGTCAGCGAAGGTGAAAGGGCAGAGACAGCGCCAGCAGCCACCGGAGTGGGCGGTGGTGCAGCAGGTGTCCGAGAAGCTGGTTAGCGGCAGCCTTCAGTGGAAGATAGAGGCTGCCAGGGAGATCCGCAAGCTCGTCAGGAAATCGCCTTCCTCTGCCAAGACGAGGTCCAGGCTGGGCGCTGCTGGAGTTGTCCAGCCTCTCGTCTTCATGCTGTCGTCATCAAACCCTGATGCACGTCACTCCTCCCTCCTCGCTCTCCTCAACCTCGCCGTCCGCAACGAACGGAACAAGGTCAAAATAGTGACAGCTGGTGCTATCCCTCCTCTGGTGGAGCTCCTCAAGACGGAAAATAGTAGCATAAGGGAATTAGCAACAGCGGCAATCTTGACACTCTCAGCTGCAGCTCCCAATAAGCCCATAATTGCTGCTTCTGGAGCTGCGCCTCTGCTTGTTCAGATCCTCAACTCCGGAAGTAACTCTACCGATCTCCTTGATGCTGGTGCTGTTTCTCCTCTCATCAACCTCCTTAAAGAGTGCAAGAAATACTCCAAGTTCGCAGAAAAAGCTACGGCACTACTTGAGATTCTCTCCAACTCTGAAGAGGGACGAACTGCAATCTCAGTTGCAGACGGCGGAATTTTAACCTTAGTAGAGACGGTTGAAGATGGATCACTAGTCAGCACACAACATGCCGTTGGAACTCTGCTGTCGTTGTGTCTAAGCTGCCGAGACAAATACCGGGAACTTATCCTCAAAGAAGGAGCAATCCCAGGTCTGTTACGGCTTACGGTGGAGGGCACAGCAGAAGCGCAAGATAGAGCTCGTTTGCTTCTGGATTTGCTTAGAGATTCTCCCCCGGAAAGAAGACTAGCCTCGTCGGTTTTGGAGAAAATCGTGTATGACATCGCCGAACGTGTAGATGGAGTAGACAAAGCTGCTGAAACAGCCAAAAGGTTATTACAAGACATGGTTCAGAGGAGTATGGAACAAAGCTTGAACTGCATTCAGCATAGAGCAGCATCTTGTAATCCTTCTGTGATTCCTTCCACTTGA 1203 0.5162 MGVGEGDSTKPEPESNDGHRHQEEDEDDDDVEGEEEEGVSESRTGMALGLSAKVKGQRQRQQPPEWAVVQQVSEKLVSGSLQWKIEAAREIRKLVRKSPSSAKTRSRLGAAGVVQPLVFMLSSSNPDARHSSLLALLNLAVRNERNKVKIVTAGAIPPLVELLKTENSSIRELATAAILTLSAAAPNKPIIAASGAAPLLVQILNSGSNSTDLLDAGAVSPLINLLKECKKYSKFAEKATALLEILSNSEEGRTAISVADGGILTLVETVEDGSLVSTQHAVGTLLSLCLSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARLLLDLLRDSPPERRLASSVLEKIVYDIAERVDGVDKAAETAKRLLQDMVQRSMEQSLNCIQHRAASCNPSVIPST 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211539g00003 400 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 217 261 IPR000225 GO:0005515
Stsc211539g00003 400 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 154 196 IPR000225 GO:0005515
Stsc211539g00003 400 MobiDBLite consensus disorder prediction 1 65 - -
Stsc211539g00003 400 Pfam Armadillo/beta-catenin-like repeat 143 182 IPR000225 GO:0005515
Stsc211539g00003 400 PANTHER U BOX DOMAIN-CONTAINING 58 332 - -
Stsc211539g00003 400 MobiDBLite consensus disorder prediction 23 37 - -
Stsc211539g00003 400 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 112 154 IPR000225 GO:0005515
Stsc211539g00003 400 Gene3D - 212 350 IPR011989 -
Stsc211539g00003 400 Gene3D - 62 211 IPR011989 -
Stsc211539g00003 400 SUPERFAMILY ARM repeat 70 388 IPR016024 -
Stsc211539g00003 400 SMART arm_5 142 183 IPR000225 GO:0005515
Stsc211539g00003 400 SMART arm_5 205 248 IPR000225 GO:0005515
Stsc211539g00003 400 SMART arm_5 249 290 IPR000225 GO:0005515
Stsc211539g00003 400 SMART arm_5 101 141 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211539g00003 Stsc-Chr211539 30281 33237 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211539g00003 74 338 U-box Gene Family AT3G54790 37.193 5.10e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211539g00003 K08332 - gmx:100782472 499.59