Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211538g00010 ATGAATAATGACGATGATCCTCAGCAGCCTAACAATATTATTGTTATTGATGATGATGATTATGGTGGTAGTGGTGGCGGCGGCGGTGATGGTGGAATTCCACCTCTTTCACCATCAACTTTCAACATTCCCCAAGTTGGTGAAGGTGGTGGTGGTTTAGTTCCTCCATTTTTCTCACCTCTACCATCAATTGCAGACACTTTTGGTCAATACAACATTACATCACCTCAATATCATAATGAACCCAATCCTCCATACCAATACCTTGGTTGGGATAACATGGATAACCTCTTTAACACCATTCCAATGTTTCTACAACCATCGCCGCCGCTGCTGCTGCCGCCACCACCACCTTCTCCTCGTCCTCGTCCTCGTCCTCCATCTTCTTCTGTTGTCTCTAGTAGCTGCTTTAAAGAATCAAATGATGATGATGAACCACTTCATCACCAAAATTCTCCCAATCATGAGACTGATACTCTTCAAGTAGATTCTGTTGGGGACATCATCATCGGCAGTAGCCAACCAAATCATCATCAGAATTCAAGTAACACTAACCTCCCACCTTTGTTTATTAGTATTCCTGAAGAACAAAACAATGAGCCTGAGCCTGAATCTGAATTTGAATTTGACCCTAAGTCAATGTCTAGGTCTGAATCTAATTTTGAATCTAACCTTAAATTTGAGCCTATGTCAATGTCTGAGTCTAAACCTAATTTTGAATCTAACCCTGAATTTGAGCCTAAGTCGTCAATGCCTGAATCTGACCCTAAATTTGAATCTAAGCTTGAATTTGAGCCTGAATCTTTGTCGGAATCTAAATTTGAATTTAAGCCTGAATTTGAGCTTAAATCTAAATTTGAATCTGTGCCTATGTCTGAATCTGATGAAACTGAGCCTGAGCCTGAGCCTGTAAATCTAGATTCTTCTAATTCTCCTGATGATGGAAATAATATCTCATTGGCGTTGTTGGCTGTGGTTGATTATAGCGGTGACAAGAATGAAAAAGAAGAATCAAGAGATGATGAGCCTCCTTTTAATCAGAATTCAAGTAAACCTAATACCCCACCTTTGGTTTTTACTGTTTCCAGTGGTGAAGAACAAAGTAATGAACTTATTGGGCCTGAATCTAAATTTGAATCTGATGACCCTAATTCTTCTAATTCTTCTGGTGGTGATAGAAATGATATCCCATTGCTCTCGTTTCCTCTGGTTGATTATAGTCTTAGCAAAGATGAAGAATCAAGTGATGATGATAATGAGGTTGTTCCTCTTTATCAGCATGATTCTACCCTCTCATCACCAATGTTGCTGCCTTTGGTCGATTACAGCGGCGGCGATGACGATGATGATACATGCCCTATGGTTGATGTTGTTATTGAGGCTACACCTGCACCACCACCACCACCACCTTCTCTTGCTTCATCATCCATGCTTGTTTCTGCTCTTCCAACACTACCTTCTTCCGCCATTGTTGTTCCTTCTTCTTCTTCTTCGTGTGCTGCTGCTGCTACTACTACTACTACTCATCCTGAACCAAACAACAATGAACAACTAGTTATAAAATCTGATGCTGTGGAACCATCAACTAAGCGCCGTAAACGGAAGAGGAGTAGTCACAGTAAAGAACACAAGGCTAAAAAAGTTGCTGGTGATAATGCTAACGTTGTTGGATTCAGAAAAGGGGTTCCAACACTTTCTGATGTGGATTTGCTGCAAGCATTTCTACGTTTAGGGACCAATCGAAATACTTTTCTGCCATTGACGATTAAAGTGAACATTAAAGAGGATGTTGTAGCAACAATGAAACTAATGGCAGAAGAAAAACAAGCAAATCTTCTGATTATGGGTACAGTTGGTCACTTTTCACTGATTGAGCTTCTGCATGAAGGAAAAACCACAACTTTTAAGGGAAATTTTACTATTATCTCATTGTCTGGCAGCATCATTGTTCGAAACCAGAATGGTGACAAAATAGAAACTACAACTAAATTATCTGTTTCAGTTGTTGGTGCTGATGGTAGGGTTTTTGGAGGACCTGTTCATGGAAGACTAATTGCATCATTTCCTATGCAGACTATTGTTTTCGCTATGGTTAGAAAAGAAGAAGAGAAACAAAAAGCTGATAAGGAAGAAGAAGCCAAAAATGTTCCTGAATCATCACAAAAGGAAGAAGCAACAAACAGTGGGAATGTTTTGTATGATGTGGATATTCAAATGGTTGACGATGAATCCATGGAGAGGTACATTAGTGGCTGGGAATCTCGAAAAATAACAGACAAAAAATAG 2286 0.3968 MNNDDDPQQPNNIIVIDDDDYGGSGGGGGDGGIPPLSPSTFNIPQVGEGGGGLVPPFFSPLPSIADTFGQYNITSPQYHNEPNPPYQYLGWDNMDNLFNTIPMFLQPSPPLLLPPPPPSPRPRPRPPSSSVVSSSCFKESNDDDEPLHHQNSPNHETDTLQVDSVGDIIIGSSQPNHHQNSSNTNLPPLFISIPEEQNNEPEPESEFEFDPKSMSRSESNFESNLKFEPMSMSESKPNFESNPEFEPKSSMPESDPKFESKLEFEPESLSESKFEFKPEFELKSKFESVPMSESDETEPEPEPVNLDSSNSPDDGNNISLALLAVVDYSGDKNEKEESRDDEPPFNQNSSKPNTPPLVFTVSSGEEQSNELIGPESKFESDDPNSSNSSGGDRNDIPLLSFPLVDYSLSKDEESSDDDNEVVPLYQHDSTLSSPMLLPLVDYSGGDDDDDTCPMVDVVIEATPAPPPPPPSLASSSMLVSALPTLPSSAIVVPSSSSSCAAAATTTTTHPEPNNNEQLVIKSDAVEPSTKRRKRKRSSHSKEHKAKKVAGDNANVVGFRKGVPTLSDVDLLQAFLRLGTNRNTFLPLTIKVNIKEDVVATMKLMAEEKQANLLIMGTVGHFSLIELLHEGKTTTFKGNFTIISLSGSIIVRNQNGDKIETTTKLSVSVVGADGRVFGGPVHGRLIASFPMQTIVFAMVRKEEEKQKADKEEEAKNVPESSQKEEATNSGNVLYDVDIQMVDDESMERYISGWESRKITDKK 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211538g00010 761 ProSiteProfiles PPC domain profile profile. 581 719 IPR005175 -
Stsc211538g00010 761 MobiDBLite consensus disorder prediction 138 152 - -
Stsc211538g00010 761 CDD DUF296 586 694 IPR005175 -
Stsc211538g00010 761 MobiDBLite consensus disorder prediction 303 317 - -
Stsc211538g00010 761 MobiDBLite consensus disorder prediction 216 248 - -
Stsc211538g00010 761 MobiDBLite consensus disorder prediction 502 522 - -
Stsc211538g00010 761 Gene3D - 587 718 - -
Stsc211538g00010 761 MobiDBLite consensus disorder prediction 502 549 - -
Stsc211538g00010 761 MobiDBLite consensus disorder prediction 329 344 - -
Stsc211538g00010 761 SUPERFAMILY AF0104/ALDC/Ptd012-like 584 706 - -
Stsc211538g00010 761 MobiDBLite consensus disorder prediction 345 394 - -
Stsc211538g00010 761 MobiDBLite consensus disorder prediction 704 719 - -
Stsc211538g00010 761 MobiDBLite consensus disorder prediction 250 292 - -
Stsc211538g00010 761 MobiDBLite consensus disorder prediction 153 192 - -
Stsc211538g00010 761 MobiDBLite consensus disorder prediction 1 48 - -
Stsc211538g00010 761 MobiDBLite consensus disorder prediction 704 730 - -
Stsc211538g00010 761 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 504 726 IPR039605 GO:0003680
Stsc211538g00010 761 MobiDBLite consensus disorder prediction 108 398 - -
Stsc211538g00010 761 MobiDBLite consensus disorder prediction 108 127 - -
Stsc211538g00010 761 Pfam Plants and Prokaryotes Conserved (PCC) domain 587 696 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211538g00010 Stsc-Chr211538 74414 78649 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211538g00010 584 705 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 34.646 1.16e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211538g00010 - - jre:108980450 82.8037