Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211537g00012 ATGTCCACCACCACAACAGACCAAGCCATCTCACATGCTTCTCACATGCCCTTCTATACCGCCACTAACGACAACGGAGAACAACACTATGACCAAAACAACGTCGTCACAGACGAAGATGACAGTGACCTTGATGATGAGCAGCAGCACAACCCCAACGACGGCGAACACAAAACAGAATTCGCCAAAAGATCCCTCCGCAGCAGGTGGTGGCCAACGGGTAAAGTTCTGGACCCGAGGTCGAGATGGGTCCAAGAATGGAACAGAGTGTTTCTTTTGGTGTGCGCCACGGGTTTGTTCGTGGACCCGCTTTTCTTCTACGTGCTCTCTGTGAGTGACACGTGTATGTGCCTCTTTGTGGATGGTTGGTTCGCCGTGACGGTAACGGTGTTGCGGTGCATGACGGACGCACTGCACGTGTGGAACATGTGGCTTCAGCTCAAGATGGCAAAGAGGACTTTTGGTTTGGGTGCTACCGCGGCGGTGGGTGGTTATGGCAGCGACGGAGGGGGGCTGAGGGATACTAACCCCCGTTCTGTGGCTCTTGGGTATCTCAAGGCTAAGACTGGATTCTTCTTTGATATCTTTGTTATTCTTCCAATACCTCAGATAGTGCTGTGGGTGGGAATCCCATCAGTGTTAGAGAAAGGGTCAGTGACAGTGGTGATGACAGTGTTGCTGGTAATGTTTCTGTTGCAATACCTTCCGAAAATATATCACGCAGTTTGCCATCTAAGAAGAATGCAGAACCTCTCTGGCTACATTTTTGGAACCGTTTGGTGGGGTATTGCTCTTAACATGATTGCCTATTTTGTCGCCTCTCATGCAGCAGGGGCATGTTGGTACTTGTTGGGGATCCAGAGAGCAGCAAAGTGCCTGAAAGAACAGTGTGCAAGAACAGATGGTTGTGGGTTAAGGATTCTTTCATGCAAAGAACCAATATACTATGGAAGCACAAGAAGCTTGGTTAGTGACAGAGCAAGGTTAGCATGGGCAGGGACCAAGGAAGCAAGGTCCATTTGCTTAGATGGACCTGACAACTATAATTATGGTGCTTATAGGTGGACTGTTCAACTTGTCACCAATGAAAATCGATTGGAAAAGATTCTTTTCCCTATCTTCTGGGGCCTCATGACTCTCAGCACTTTTGGTAACCTGGAGAGCACAACAGAATGGCTAGAAGTAGTTTTTAACATCATTGTCTTGACCAGTGGTCTTCTTCTTGTCACCATGTTAATTGGAAACATCAAGGTGTTTTTGCATGCAACAACATCAAAGAAGCAAGCCATGCAACTGAAGATGAGGAACATTGAATGGTGGATGAGGAAGAGGAGGTTGCCTCAAGGGTTTCGGCAGAGAGTGCGAACGTATGAACGACAGCGTTGGGCCGCTATGCGTGGCGTTGATGAGTGTGAGATGACCAGAAATTTGCCTGAAGGGCTAAGAAGAGACATAAAATATCATCTTTGTTTGGATTTGGTCAAGCAGGTTCCACTATTTCAGCATATGGATGAACTTGTCCTAGAGAACATTTGTGACCGCGTGAAGTCTCTCATATTCACAAAGGGAGAAACGATAGCCAGAGAGGGAGACCCAGTTCAAAGAATGCTATTTGTAGTTAGGGGTCACCTTCAAAGCAGCCAAGTTCTAAGAGATGGCGTGGAAAGTTGTTGCATGTTAGGTCCCGGAAACTTCAGCGGAGACGAGCTCCTTTCGTGGTGTTTAAGGCGACCCTTCATAGAGCGCCTTCCGCCATCTTCATCGACTCTTGTAACACTTGAAACCACCGAGGCATTCGGTCTAGAAGCAGAGGATGTGAAGTATGTTACCCAACACTTCAGATATACTTTTGTGAAGGAAAAAGTGAAAAGAAGTGCCAGGTATTATTCGCCGGGATGGCGAACATGGGCTGCCGTGGCAATTCAATTGGCTTGGAGGAGGTACAAGCATCGATTGACTTTGACTTCCTTGTCCTTTATAAGGCCAAGGAGGCCTCTTTCACGTTCCTCTTCCTTGGGAGAAGACAGGATTAGGCTCTATACAGCATTGCTAACCTCACCAAAGCCTAATCAAGAAGATTTTGACTTCTGA 2091 0.4735 MSTTTTDQAISHASHMPFYTATNDNGEQHYDQNNVVTDEDDSDLDDEQQHNPNDGEHKTEFAKRSLRSRWWPTGKVLDPRSRWVQEWNRVFLLVCATGLFVDPLFFYVLSVSDTCMCLFVDGWFAVTVTVLRCMTDALHVWNMWLQLKMAKRTFGLGATAAVGGYGSDGGGLRDTNPRSVALGYLKAKTGFFFDIFVILPIPQIVLWVGIPSVLEKGSVTVVMTVLLVMFLLQYLPKIYHAVCHLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKEQCARTDGCGLRILSCKEPIYYGSTRSLVSDRARLAWAGTKEARSICLDGPDNYNYGAYRWTVQLVTNENRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVRTYERQRWAAMRGVDECEMTRNLPEGLRRDIKYHLCLDLVKQVPLFQHMDELVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGVESCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRSSSLGEDRIRLYTALLTSPKPNQEDFDF 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211537g00012 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 57 656 - -
Stsc211537g00012 696 Pfam Cyclic nucleotide-binding domain 520 607 IPR000595 -
Stsc211537g00012 696 FunFam Cyclic nucleotide-gated ion channel 1 426 490 - -
Stsc211537g00012 696 CDD CAP_ED 499 605 IPR000595 -
Stsc211537g00012 696 Pfam Ion transport protein 87 416 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc211537g00012 696 SUPERFAMILY cAMP-binding domain-like 425 613 IPR018490 -
Stsc211537g00012 696 SUPERFAMILY Voltage-gated potassium channels 78 420 - -
Stsc211537g00012 696 MobiDBLite consensus disorder prediction 21 61 - -
Stsc211537g00012 696 Gene3D Helix hairpin bin 424 490 - -
Stsc211537g00012 696 ProSiteProfiles cAMP/cGMP binding motif profile. 499 609 IPR000595 -
Stsc211537g00012 696 Gene3D Jelly Rolls 497 615 IPR014710 -
Stsc211537g00012 696 FunFam cyclic nucleotide-gated ion channel 4 497 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211537g00012 Stsc-Chr211537 77862 96020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211537g00012 65 695 Ion Channels AT5G54250 80.190 0.0 1033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211537g00012 K05391 - gmx:100796761 1127.85