Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211536g00016 ATGGCCTCTTCTTCACCTCATGCAGAAGCACATGCTCTACTGAAGTGGAAATCCTCCCTTGACAACCAGAGTCAAACTCTGCTCTCTTCATGGAACGGTAACACTGCTTGTCGCGATTGGATAGGAATCACATGTGATGATGAATCCAAATCTGTGCTCAAAATGAACCTCAAAAGTCTTGGACTAAATGGTACTCTTCAAACTCTCAACTTCTCATCACTTCCCAACATACTCACCATTCACATAAGCAACAACTCTTTCTTTGGAACTATTCCTCCCCAAATTGGAGTACTTTCCAATTTGCACACACTTGAATTCTCTACCAATCATTTCTCAGGTAGCATTCCCAAAACCATTGGTAATCTCTCAAAACTCTCTTACCTTGATCTCAGTGGCAATAGCCTGACTGGGATGATTCCATTTGAGATAACAAAGTTGATTGGTCTTTACACTTTGGCATTGGGAGGCAATGTTTTCAGTGGCTCCATCCCTCAAGAAATTGACTCAATGAGCAATTTGACAGTAATTGATATCCCTTGGTCTAATCTCACAGGGTCTATCCCAGTTTCTATAGAGAAATTGACCAATTTGTCCCATTTTGATGTAGGTGGCAACAACCTTTCTGGCATTATTCCTCCTAGAATCTGGAATATGGACCTAAATCATTTGTCACTTGCAGTCAATAACTTTTATGGTTCCATCCCTCAAGAAATTGTCAAATTGGTGAACCTGGAGATTCTATATCTCCAAGAAAGTGGTCTTTCTGGTTCCATGCCCCTAGAATTTCATATGTTAAGAAATCTAATAGAGGTTGATATTAGTAGTTGCAACCTCACTGGTACTATTCCTACTTCAATAGGAGCATTGACCAATATATCACTTCTCAAATTAAGTAGCAATCAACTTCATGGCAGAATTCCTCATGAAATTGGGAATTTAGTCAACCTTAAGATTCTATTTCTTGGTGGTAATAGTCTTATAGGATCTATTCCTCATGAGATTGGAAGGATGAGAAGTCTCAGTCAACTCGATTTGTCTAATAACAATTTTACTGGTCAAATCCCTTCTAAAGTAGGAAACTTGACCAATTTACTTAATCTTTACCTTTACCAAAACTCTCTCTCTGGCTCTATTCCCAATGAAATTGGGAATCTTTATTCTCTTACCACAATTCAGTTGTTAGGTAACAACCTTTCAGGGCCAATTCCACCATCCATAGGTAACTTGGTCAATTTGGAATCCCTTCTCCTATTTTCCAATAAACTCTCTGGTGCAATTCCTTCTACCATTGGAAACTTGACAAAACTCACTATGTTATCTTTGTTCTCCAATGATCTCAGTGGCAACATTCCAATTGAAATGAACATGGTTACCAACCTGATGCTTCTGCAATTGTCTGATAACAATTTCATAGGCCAATTGCCTCAAAACATTTGCTTTGCTGGAAAGCTAACAAATTTTGCTGCTAGCAATAACCATTTCACAGGCTCAATCCCAAAGAGCTTGAAAAATTGCTCTAGCCTTGTAAGAGTTAGGCTTCAACAAAACAATTTGAGTGGAAATATTACTGATGATTTTGGTGTATATCCAAATTTGGTCTACATTGAATTGAGTGACAATAATTTGTTCGGCCACCTTTCGTCGAACTGGGGAAAGTGTCTTAACCTCACAAGTTTCAAGATCTCCAACAACAACTTGTCTGGCTACATACCATCCGAAATCGGCAATGCAACCAACTTACATGTTCTTGACTTATCTTCAAATCATCTCACAGGAGGAATTCCAAAGGACTTTGGTAAATTGATCAATTTGATTGATTTCTTGATCAACAATAATCATCTTTCTGGGGATATTCCAATTGAAGTTTCATCGTTAAAGGAACTCGCAACCTTGGATCTTGCATCAAATAACTTAAGTGGCTTAATCCCGAAACAACTTGGAAGTTTGCTCAAGTTGTTGCAGTTGAATCTGAGCCATAACAAATTTGAGGGAGAAATCCCATCAAATCTGGGGAAATTAATGTTTCTTCAAAGTCTTGACTTCAGTTGGAACTTCTTGAGTGGTACAATACCATCAATGCTTGGAGACTTGAGAGTCTTAGAAACATTGAACATCTCACATAATAATCTCTCTGGTGTCATTCCTTCTAGTTTTGATGATATGTTAAGCTTGACATTCATTGATATATCAAACAACCAACTAGAGGGTCCAATTCCCAGCATTCCAGCATTTCAAAAAGCTTCAATTGCAGCACTGAGAAATAACAAAGGCTTATGTGGTAATGTTTCTGGTTTGGATTCTTGTCCAACACCTATTACCATATCCCGCAGCCATAAGACTAATACAAGAGTTCTAGTTCTAGTTTTGGCCCTTACTTTGGGAGTTCTAGTGCTAGCACTTTTGGCCTTTCTACTCGCATTTCGCCTCCGTGGACGCATAAGTGCAGAAGAAAACCAGCCTGAAGAATCAGAGACTCAAAATATGTTTGCTATATGGAGTTATGATGGGAAAATGGTGTATGACAACATTGTTGAAGCCACAGAAGGATTTCATGAGACGTATCTAATTGGTGTTGGGGGATATGGCCTTGTTTACAAAGCTGAATTGGTGACAGGTCAAGTTGTTGCTGTGAAGAAGCTCCATTTGACACCAGATTCTTCAAGTTTAAGAGCTTTTGCAACTGAGGTTCAAGTTTTGACCGAAATTCGCCACCGCAACATTGTGAAGCTATATGGATTTTGTTCTCACAACCAATGCTCCTTTTTGGTTTATGAGTTCATTGAAAGGGGAAGCATAGATAAGATCCTAGGCAATGATGAAGAAGCAGTTGAATTTGATTGGAGTAGAAGGGTGAATGTTGTTAAAGGCATAGCAAATGCTTTGTGCTATATGCATCATGGCTGCAATCCTCCTATTGTTCATCGCGACATATCAAGCAAGAATGTTCTTCTAGATTTGGAATATGAGGCTCATGTTTCAGACTTTGGAACTGCTAAGCTTCTTAATGAGAACTCATCCAATTTGACCTCATTTGCAGGCACCTTTGGATATGCTGCTCCAGAACTTGCATACACTATGGAAGTAAATGAGAAATGTGATGTTTTTAGTTTTGGGGTATTAGCATTTGAAATCCTCTTTGGAAAGCACCCAAGAGAAGCCATATTACCTATAATGTCATTATCATATTCTTGGAGACAAATCGCCACAAAAAATGATAATTTTTCTCTAGAAAACATGTTGGACCAGCGTCTCTCTTATCATCCCATGAGTCCAATTTCCAATGAAGTGGCTTTGATTCTAAGGGTAGCAGTGGCTTGTTTGAATGAAAATCCACATTCTCGCCTTACCATGGAGCAGGTAGTTAAGGAACTTGAAATGCTACACTAA 3387 0.3868 MASSSPHAEAHALLKWKSSLDNQSQTLLSSWNGNTACRDWIGITCDDESKSVLKMNLKSLGLNGTLQTLNFSSLPNILTIHISNNSFFGTIPPQIGVLSNLHTLEFSTNHFSGSIPKTIGNLSKLSYLDLSGNSLTGMIPFEITKLIGLYTLALGGNVFSGSIPQEIDSMSNLTVIDIPWSNLTGSIPVSIEKLTNLSHFDVGGNNLSGIIPPRIWNMDLNHLSLAVNNFYGSIPQEIVKLVNLEILYLQESGLSGSMPLEFHMLRNLIEVDISSCNLTGTIPTSIGALTNISLLKLSSNQLHGRIPHEIGNLVNLKILFLGGNSLIGSIPHEIGRMRSLSQLDLSNNNFTGQIPSKVGNLTNLLNLYLYQNSLSGSIPNEIGNLYSLTTIQLLGNNLSGPIPPSIGNLVNLESLLLFSNKLSGAIPSTIGNLTKLTMLSLFSNDLSGNIPIEMNMVTNLMLLQLSDNNFIGQLPQNICFAGKLTNFAASNNHFTGSIPKSLKNCSSLVRVRLQQNNLSGNITDDFGVYPNLVYIELSDNNLFGHLSSNWGKCLNLTSFKISNNNLSGYIPSEIGNATNLHVLDLSSNHLTGGIPKDFGKLINLIDFLINNNHLSGDIPIEVSSLKELATLDLASNNLSGLIPKQLGSLLKLLQLNLSHNKFEGEIPSNLGKLMFLQSLDFSWNFLSGTIPSMLGDLRVLETLNISHNNLSGVIPSSFDDMLSLTFIDISNNQLEGPIPSIPAFQKASIAALRNNKGLCGNVSGLDSCPTPITISRSHKTNTRVLVLVLALTLGVLVLALLAFLLAFRLRGRISAEENQPEESETQNMFAIWSYDGKMVYDNIVEATEGFHETYLIGVGGYGLVYKAELVTGQVVAVKKLHLTPDSSSLRAFATEVQVLTEIRHRNIVKLYGFCSHNQCSFLVYEFIERGSIDKILGNDEEAVEFDWSRRVNVVKGIANALCYMHHGCNPPIVHRDISSKNVLLDLEYEAHVSDFGTAKLLNENSSNLTSFAGTFGYAAPELAYTMEVNEKCDVFSFGVLAFEILFGKHPREAILPIMSLSYSWRQIATKNDNFSLENMLDQRLSYHPMSPISNEVALILRVAVACLNENPHSRLTMEQVVKELEMLH 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211536g00016 1128 FunFam Nuclear pore complex protein NUP107 6 164 - -
Stsc211536g00016 1128 Pfam Leucine rich repeat 676 734 IPR001611 GO:0005515
Stsc211536g00016 1128 FunFam MDIS1-interacting receptor like kinase 2 927 1128 - -
Stsc211536g00016 1128 Pfam Protein kinase domain 851 1122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211536g00016 1128 FunFam MDIS1-interacting receptor like kinase 2 isoform A 354 443 - -
Stsc211536g00016 1128 Gene3D Ribonuclease Inhibitor 6 163 IPR032675 -
Stsc211536g00016 1128 FunFam Leucine-rich repeat receptor protein kinase MSP1 813 926 - -
Stsc211536g00016 1128 SUPERFAMILY RNI-like 420 738 - -
Stsc211536g00016 1128 ProSitePatterns Protein kinases ATP-binding region signature. 856 879 IPR017441 GO:0005524
Stsc211536g00016 1128 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 457 771 - -
Stsc211536g00016 1128 Gene3D Ribonuclease Inhibitor 164 257 IPR032675 -
Stsc211536g00016 1128 Gene3D Ribonuclease Inhibitor 355 455 IPR032675 -
Stsc211536g00016 1128 SUPERFAMILY L domain-like 235 508 - -
Stsc211536g00016 1128 Pfam Leucine rich repeat N-terminal domain 8 46 IPR013210 -
Stsc211536g00016 1128 Pfam Leucine Rich Repeat 579 601 IPR001611 GO:0005515
Stsc211536g00016 1128 Gene3D Ribonuclease Inhibitor 258 354 IPR032675 -
Stsc211536g00016 1128 Gene3D Ribonuclease Inhibitor 456 770 IPR032675 -
Stsc211536g00016 1128 Gene3D Transferase(Phosphotransferase) domain 1 927 1128 - -
Stsc211536g00016 1128 SMART LRR_typ_2 409 433 IPR003591 -
Stsc211536g00016 1128 SMART LRR_typ_2 194 218 IPR003591 -
Stsc211536g00016 1128 SMART LRR_typ_2 649 673 IPR003591 -
Stsc211536g00016 1128 SMART LRR_typ_2 625 648 IPR003591 -
Stsc211536g00016 1128 SMART LRR_typ_2 361 385 IPR003591 -
Stsc211536g00016 1128 SMART LRR_typ_2 313 337 IPR003591 -
Stsc211536g00016 1128 SMART LRR_typ_2 697 720 IPR003591 -
Stsc211536g00016 1128 SMART LRR_typ_2 122 146 IPR003591 -
Stsc211536g00016 1128 SMART LRR_typ_2 457 481 IPR003591 -
Stsc211536g00016 1128 SMART LRR_sd22_2 361 387 - -
Stsc211536g00016 1128 SMART LRR_sd22_2 313 332 - -
Stsc211536g00016 1128 SMART LRR_sd22_2 409 435 - -
Stsc211536g00016 1128 SMART LRR_sd22_2 577 598 - -
Stsc211536g00016 1128 SMART LRR_sd22_2 122 151 - -
Stsc211536g00016 1128 SMART LRR_sd22_2 625 646 - -
Stsc211536g00016 1128 SMART LRR_sd22_2 194 220 - -
Stsc211536g00016 1128 FunFam Leucine-rich receptor-like protein kinase family protein 262 353 - -
Stsc211536g00016 1128 ProSiteProfiles Protein kinase domain profile. 850 1128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211536g00016 1128 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 515 1125 - -
Stsc211536g00016 1128 SUPERFAMILY Protein kinase-like (PK-like) 827 1126 IPR011009 -
Stsc211536g00016 1128 FunFam Leucine-rich repeat receptor protein kinase EMS1 165 261 - -
Stsc211536g00016 1128 ProSitePatterns Tyrosine protein kinases specific active-site signature. 972 984 IPR008266 GO:0004672|GO:0006468
Stsc211536g00016 1128 Gene3D Phosphorylase Kinase; domain 1 811 926 - -
Stsc211536g00016 1128 PRINTS Leucine-rich repeat signature 125 138 - -
Stsc211536g00016 1128 PRINTS Leucine-rich repeat signature 577 590 - -
Stsc211536g00016 1128 SUPERFAMILY L domain-like 34 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211536g00016 Stsc-Chr211536 85945 89832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211536g00016 361 762 Receptor kinase-like Gene Family AT4G08850 31.762 1.82e-46 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc211536g00016 Pkinase 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211536g00016 - - gmx:100808316 1247.26