Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211536g00004 ATGAATTGGGGAATTGAAGCTCTGCCTCCATCTTCCTATCTCCGAAGTTCCAGCTGGTTGTTCCAAGAAACCAAAGGAGCTAAATGGACTTTACAAGAGAACAAGCTCTTTGAGAATGCTCTGGCTTTGTTTGATCCAAACATCCCAGATCGTTGGGCGAGGGTGGCAGCGATGATTCCCGGTAAAACAATTGGTGATGTGATCAAACACTATAGAGAACTTGAAGAGGATGTGAGTGTCATTGAAGCAGGCCTGATCCCTATTCCGGGGTATGATGATTCTGCTTCTTTCTCATTCAAGTGGCTTGCCAATCATGGCTTTGATGAGTTTAAGCAGTTTTATAGTGCTGCTGGGAAAAGGGGTGGTTCCAACAGGCCAACTGAGCATGAAAGAAAGAAAGGAGTGCCATGGACAGAGGAGGAGCACAGGCAATTTCTTCTGGGTCTCAAGAAGTATGGCAAAGGAGATTGGAGAAACATCTCAAGGAGTTTTGTGACGACAAGAACACCGACTCAGGTTGCAAGCCATGCTCAGAAGTACTTCATTCGGCAGCTTACGGGATTGAAGGATAAGAAGAGATCGAGTATCCATGATATCACCATGGTCAATCTTCCGGAAATGAAATCACCTTCATGGGACACTACTATAACTTCTCCTGTTCACTTGGTAATAAACACGGTGAATCCGCAACAGAATCAGAAACTGGCATGTGAGGACATGCCAACGGTTTTTAAGTCAACAAGTGGAAACATGTATGCACCTTTGAGGGGGATTTCTTCATATGGATCTAAACTAAAGGATCCTGGTTTTTTCATGAGCACTCTCCACGGTTGCACCACATGA 843 0.4472 MNWGIEALPPSSYLRSSSWLFQETKGAKWTLQENKLFENALALFDPNIPDRWARVAAMIPGKTIGDVIKHYRELEEDVSVIEAGLIPIPGYDDSASFSFKWLANHGFDEFKQFYSAAGKRGGSNRPTEHERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRSFVTTRTPTQVASHAQKYFIRQLTGLKDKKRSSIHDITMVNLPEMKSPSWDTTITSPVHLVINTVNPQQNQKLACEDMPTVFKSTSGNMYAPLRGISSYGSKLKDPGFFMSTLHGCTT 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211536g00004 280 SMART sant 133 183 IPR001005 -
Stsc211536g00004 280 SMART sant 25 77 IPR001005 -
Stsc211536g00004 280 MobiDBLite consensus disorder prediction 118 137 - -
Stsc211536g00004 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Stsc211536g00004 280 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Stsc211536g00004 280 Gene3D - 135 185 - -
Stsc211536g00004 280 Gene3D - 21 88 - -
Stsc211536g00004 280 FunFam Transcription factor SRM1 21 88 - -
Stsc211536g00004 280 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Stsc211536g00004 280 SUPERFAMILY Homeodomain-like 28 82 IPR009057 -
Stsc211536g00004 280 CDD SANT 28 74 IPR001005 -
Stsc211536g00004 280 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Stsc211536g00004 280 FunFam transcription factor MYB1R1 135 186 - -
Stsc211536g00004 280 Pfam Myb-like DNA-binding domain 28 73 IPR001005 -
Stsc211536g00004 280 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Stsc211536g00004 280 CDD SANT 136 181 IPR001005 -
Stsc211536g00004 280 MobiDBLite consensus disorder prediction 123 137 - -
Stsc211536g00004 280 SUPERFAMILY Homeodomain-like 131 184 IPR009057 -
Stsc211536g00004 280 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 24 228 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211536g00004 Stsc-Chr211536 20379 22460 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc211536g00004 Myb_DNA-binding 4.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211536g00004 - - gmx:100775697 390.578