Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211535g00009 ATGTGGAATTCCGATTCCGCTTCCTTGGACTTCAGGGAAAAGCTTCTTCACATTGCCTCCCTCAAAGGTGACAATGGAAAACTCCCTTACTTTGAGAGCCTTGGCTTCACTCTTTCTTCCTCCATCACTCTCGCCAGGTATCTCACCTCTCAGGACCTCCCATCTCTCATGCACAAGGTTGCATCCATCAAGGACCTCTTATTTTCTCATCAAGCTGATCATCATCTCATCAACAACATTCGTCGCATGATGCTCCACTTGTCCATTCCAGTCGATGATGATCTACAGCATACTCTCTCCTTCTTTGAGAAGCTTGAAGCCAAGCGTGGAGGCTTAAGCGTTTTGCTCTCTGCCAAAGACATTGCCTTCTGCCATTTGATCGAATCCTTTCCTCGTCTACTTTCACTCTCACTGGATAACCATGTCATTCCTATTATCGATTTTCTCCACAATATTGGTGTCCCCAGATCTCATATCCCAACCATAATACTCTCTTTTCCGCCTATTTTGTTCTGGACCATTCAACTCCTTAAAGCTAGACTCCTCACCTTCAAACAGATTCATGTGGTGGATAAAGATTATATCAAGATGTTGATCAAATATCCTTGGGTTCTATCTACAAGCATTCAAGAGAATTATGAGGAGGTTCATGCCTTTTTTCTTTCTGAGAAGGTTAGAAAGATATGTATTGACAGTGCAATCAAAGGCCAACCTTACCTATTGGGTTGTTCAACCGGAAAGCTGAAGACGATGTTGGATCAGTTGGCTGATCTTGGAGTTAAAGGAAACAAGTTAGATAGGATTATTGCTAGAAGCCCGCAAGTACTATTGCGAAAGCCCCGAGATTTTCTACAGATTGTTCTGTTCTTTGAAAATATGGGCTTGGACAGAGAAATGATTGGGAGAATTCTTTCTCGTTGCCCAGAAATTTTCGCAGCCAGCATTGATAAAACTCTTCAGAGGAAGATTGAATTCCTTTCTGGCGTTGGTGTTTCTGAAGCTTATCTTCCTAGTGTAATCAGAAAGTATCCAGAATTACTTGTAACCGACACTGATAGAACTATGCTGCATCGGCTGAGGTACTTGATGAAGTTAGGACTCTCGGAGAAAGACGTTGGGTTTATGGTGCGCACATTTTCTCCTCTCCTTGGGTATAGTATAGAGGAGGTTCTGAGGCCAAAAGCAGAATTTTTAGTGAAGTCGATGGGGAAGCCGGTACGAGAAGTTGTGCATTACCCTCGGTATTTTAGCTATTCATTAGAAAAGAAGATAAAGCCAAGATACTTTGTACTCAAGGGAAGGCAAGTTGAATGTAGCTTAAAGGATATGCTGGGAAAAAATGACGAGGAATTTGCCGCAGAATTTATACTCTCTGATAACGTGTTGTAA 1389 0.4219 MWNSDSASLDFREKLLHIASLKGDNGKLPYFESLGFTLSSSITLARYLTSQDLPSLMHKVASIKDLLFSHQADHHLINNIRRMMLHLSIPVDDDLQHTLSFFEKLEAKRGGLSVLLSAKDIAFCHLIESFPRLLSLSLDNHVIPIIDFLHNIGVPRSHIPTIILSFPPILFWTIQLLKARLLTFKQIHVVDKDYIKMLIKYPWVLSTSIQENYEEVHAFFLSEKVRKICIDSAIKGQPYLLGCSTGKLKTMLDQLADLGVKGNKLDRIIARSPQVLLRKPRDFLQIVLFFENMGLDREMIGRILSRCPEIFAASIDKTLQRKIEFLSGVGVSEAYLPSVIRKYPELLVTDTDRTMLHRLRYLMKLGLSEKDVGFMVRTFSPLLGYSIEEVLRPKAEFLVKSMGKPVREVVHYPRYFSYSLEKKIKPRYFVLKGRQVECSLKDMLGKNDEEFAAEFILSDNVL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211535g00009 462 Gene3D Transcription termination factor 3, mitochondrial 230 459 IPR038538 -
Stsc211535g00009 462 FunFam Mitochondrial transcription termination factor family protein 246 459 - -
Stsc211535g00009 462 Pfam mTERF 146 452 IPR003690 GO:0003690|GO:0006355
Stsc211535g00009 462 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Stsc211535g00009 462 SMART mt_12 231 261 IPR003690 GO:0003690|GO:0006355
Stsc211535g00009 462 SMART mt_12 195 226 IPR003690 GO:0003690|GO:0006355
Stsc211535g00009 462 SMART mt_12 406 437 IPR003690 GO:0003690|GO:0006355
Stsc211535g00009 462 SMART mt_12 373 405 IPR003690 GO:0003690|GO:0006355
Stsc211535g00009 462 SMART mt_12 301 332 IPR003690 GO:0003690|GO:0006355
Stsc211535g00009 462 SMART mt_12 337 368 IPR003690 GO:0003690|GO:0006355
Stsc211535g00009 462 SMART mt_12 266 296 IPR003690 GO:0003690|GO:0006355
Stsc211535g00009 462 PANTHER CGI-12 PROTEIN-RELATED 97 254 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211535g00009 Stsc-Chr211535 55547 58893 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc211535g00009 mTERF 1e-90 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211535g00009 K15031 - gmx:100802127 623.239