Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211535g00008 ATGAATACTATGAATAAGAGTAGTAGTTGTGAAGAAGGTGAAGAAGATGTGAAAGATTTTCTTGACATTTTACTTGATGTTTCTAAGGACAAAGACTCCGAGATTGAGTTAACCAGAAATCATATCAAATCATTGATCCTTGTAACTGAACTGTTCAACAACCCAAGGGTCTTGAAGAAGGCACAAAAAGAGGTAGACAGAGTCTCTGGGAACCAAAGATTGGTATGTGAAGAGGACAGTCCAAACCTTCCATACATCCATGCAATCATAAAAGAAACACTAAGACTGCATCCTCCAATACCACTCCTTATAAGGAAAGGGCTCAGAGATTGCATAGTTGGTGGTTACAAGATCCCCAAGGGCTCAATGGGATGCATTAATATTTGGGCCATGGGCCGAGAGCCAACTCTGTGGGAGAACCCAATAGAGTTCAGGCCCGAGAGATTTCTTGAAGGAGAAGGCAACACATTAGATGTCAAAGGCAACCACTTTGAGCTATTGCCCTTTGGTGCTGGAAAGAGGGGTTGTCTTGGCATGAACTTGGCCTTGAGGGAGTTACTTGCCATTATTGGAGCTCTTGTTCAATGCTTTGATTGGAAGATGTTTGATTCTGAAGGGAAGTTGTTAAGTTATGGAACACCTATAGATATGGATGAACAGCCAGGATTAACTGTTCCTAGAGCCCATGATCTTATTTGTGTCCCATAA 708 0.4181 MNTMNKSSSCEEGEEDVKDFLDILLDVSKDKDSEIELTRNHIKSLILVTELFNNPRVLKKAQKEVDRVSGNQRLVCEEDSPNLPYIHAIIKETLRLHPPIPLLIRKGLRDCIVGGYKIPKGSMGCINIWAMGREPTLWENPIEFRPERFLEGEGNTLDVKGNHFELLPFGAGKRGCLGMNLALRELLAIIGALVQCFDWKMFDSEGKLLSYGTPIDMDEQPGLTVPRAHDLICVP 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211535g00008 235 Gene3D Cytochrome P450 2 215 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211535g00008 235 SUPERFAMILY Cytochrome P450 13 233 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211535g00008 235 PRINTS P450 superfamily signature 88 99 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211535g00008 235 PRINTS P450 superfamily signature 167 176 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211535g00008 235 PRINTS P450 superfamily signature 53 66 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211535g00008 235 PRINTS P450 superfamily signature 176 187 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211535g00008 235 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 13 235 - -
Stsc211535g00008 235 PRINTS E-class P450 group I signature 176 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211535g00008 235 PRINTS E-class P450 group I signature 44 70 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211535g00008 235 PRINTS E-class P450 group I signature 127 151 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211535g00008 235 PRINTS E-class P450 group I signature 87 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211535g00008 235 PRINTS E-class P450 group I signature 166 176 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211535g00008 235 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 169 178 IPR017972 GO:0005506|GO:0016705
Stsc211535g00008 235 Pfam Cytochrome P450 48 213 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211535g00008 Stsc-Chr211535 53912 55261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211535g00008 4 235 Cytochrome P450 AT5G06900 37.751 5.70e-58 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211535g00008 K23179 - gmx:100783503 333.183