Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211534g00023 ATGATGTTTCAGGAGACCGCTACCATGGCAACACGGTGGGGGAGTGAAGCGGTGGAGGCGCCGATGTCTAACTGGACTCGTGAGGAGGATAAGATGTTCGAGAGAGCCTTGCTTTTCGTGCCGGAGGACCTGCCGAACCGCTGGGACAAGATAGCTGAGCAGGTTCCCGGCAAGTCAGCCGTCGAAGTCAGGGACCGCTACGAGGCCTTGGTGCGCGACGTATTTGAAATCGACTCCGGCCGAGTCGAGGTGCCGAGTTACTCGGATGACTCGGCTGGTAGTGGCGGTGGCGGTGGTGGAGGAGGGTTGTCTTCTTGGGACTCAGCTAATCAGATCTCGTTTGGGTCAAAACCTAGGAATAGCGACAACGAGAGGAAGAAAGGCACCCCTTGGACCGAAGAGGAACACAGGTTGTTTTTGATTGGGCTAAGCAAATTTGGGAAGGGAGATTGGAGAAGCATTTCAAGAAATGTGGTTGTTACAAGAACACCTACTCAAGTAGCTAGCCATGCCCAAAAGTACTTTCTTCGCCAGAATTCGGTGAAGAAAGAGAGGAAGAGATCAAGCATCCATGACATAACCACCGTGGATAGTAACTCCGTGCCGGTGCCTATTGATCAGAATTGGGTTCCCCCTCCACAGCAAGAGATGCAGCAACAGCAACATCAACAGCAACAACACTTTAATCCTCTCAATCAATTTGGCGGTGGGTTTGGGTATTCAAACTATGCTGGATTTTGA 741 0.5155 MMFQETATMATRWGSEAVEAPMSNWTREEDKMFERALLFVPEDLPNRWDKIAEQVPGKSAVEVRDRYEALVRDVFEIDSGRVEVPSYSDDSAGSGGGGGGGGLSSWDSANQISFGSKPRNSDNERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVPVPIDQNWVPPPQQEMQQQQHQQQQHFNPLNQFGGGFGYSNYAGF 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211534g00023 246 Gene3D - 129 181 - -
Stsc211534g00023 246 ProSiteProfiles Myb-like domain profile. 123 175 IPR001005 -
Stsc211534g00023 246 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 229 IPR043363 -
Stsc211534g00023 246 FunFam Transcription factor SRM1 18 84 - -
Stsc211534g00023 246 SUPERFAMILY Homeodomain-like 125 180 IPR009057 -
Stsc211534g00023 246 SUPERFAMILY Homeodomain-like 23 79 IPR009057 -
Stsc211534g00023 246 MobiDBLite consensus disorder prediction 85 130 - -
Stsc211534g00023 246 CDD SANT 130 175 IPR001005 -
Stsc211534g00023 246 Pfam Myb-like DNA-binding domain 130 175 IPR001005 -
Stsc211534g00023 246 Pfam Myb-like DNA-binding domain 23 67 IPR001005 -
Stsc211534g00023 246 ProSiteProfiles SANT domain profile. 126 179 IPR017884 -
Stsc211534g00023 246 FunFam transcription factor MYB1R1 129 180 - -
Stsc211534g00023 246 SMART sant 21 73 IPR001005 -
Stsc211534g00023 246 SMART sant 127 177 IPR001005 -
Stsc211534g00023 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 75 IPR017930 -
Stsc211534g00023 246 CDD SANT 24 71 IPR001005 -
Stsc211534g00023 246 Gene3D - 19 84 - -
Stsc211534g00023 246 NCBIfam myb-like DNA-binding domain, SHAQKYF class 126 178 IPR006447 GO:0003677
Stsc211534g00023 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 179 IPR017930 -
Stsc211534g00023 246 MobiDBLite consensus disorder prediction 104 118 - -
Stsc211534g00023 246 ProSiteProfiles Myb-like domain profile. 23 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211534g00023 Stsc-Chr211534 114343 116041 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc211534g00023 Myb_DNA-binding 4.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211534g00023 - - adu:107467340 398.282