Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211533g00019 ATGGCCCAACCTCATTCCACTTCAAATTCAACTCTCACTCCTCCTCCGTCTACTTCCGCAGGTAACAATGAATCTTCTAGAGCCTCACCGTCTTCTTCAAGACACGGCCGTGTTGACGATCAAAACTCCGCTGAGCCGATCGTTAGCTATGCTGGAACAGTCATTGGCTGGGGATTCGGGGACGCGTCTTCGGCTGTTAGAGAAGATGCGTGGTCATGCTTTGCTGTTGTATTCACGTTTTGGTTCTTCGTTTCGGTGACTATTATACTTGGGGTTTATGGATCCACGAGTCTCATGCTTGGTCCAGAAACATCGATAGTGTTCCAACCTAGCCCTCTGTTCGTGCAATATCTCACGGTAGAAAACTTAGAAGAAAAGCCAGGTCCCATTGTGTATGGTACCTACCGATATCCAGATCTTGATGTTATTACCACTTGGATAGAAACTCTGCATGTAACTATTCCTTCTGACACACATCAGGAATGGATTTATTATCTGAATACAGGTTCAGAAGTAAATATTTCATATCACTTGAGCTCCGAGAGCTCCTCGGTTCTCCTGGTAATTGCAGATGGGGCTGAAAGCCTCACTCAGTGGATTGAATACCCGACATATCCCAATTCAACTCTCTCATGGAACGTGATCCACGGAACTGGTATGATTACACAGAAAATATACAGTTCGTCAAGCTATTATATAGCGTTGGGAAATTTGGATGAGGTGGTGCAGGTGGAACTAAACCTGACAGTTAGGGCCTACTTGCACAATACAAAGAATGCTTACTACAAATGTGCCTTGGCAAGTAGTAGTTCATGCACCTTGGGCATTTTCTTTCCACACGGAAACGTAGCTATCTTGACTACTCCTGGTCCACAAAAGAATGCATCAGAAAATGAATGGTACGTGAAACTGACCTATGGACCTAGATGGATCACATATATTGTAGGCATAGGTGGATTGACTATGTTAATGTATGGGGCATTCAACCTCTTGAACAATCTCCGGTGTGCCCGTGAAGAAAGAGCAGCAGGGGCTATACAAAATGGAACAGCACCTGAAAGAGGCCCTTTGCTCTCTCGAAAAGATGATGACCTTTCCAGTTGGGGATCATCATATGATTCAGTTTCTCAAGATGACGACGATCTTGAGTTCCCGGCCGTAGGAGGTTCTGCAGAGGGGAATAAGTCTGTAGGAGGTAATGGAGAAAGTAGCAACAATACTCAGCGTCTCTGTGCCATTTGCTTTGATGCTCCCAGGGATTGCTTCTTCCTTCCTTGTGGCCACTGTGCAACTTGTTTTGAATGTGGAACTAGGATAGCCGAGGCAGCTGGTACTTGCCCTGTTTGTCGTCGGAACATGAAAAAGGTGCGGAAGATTTTTACTGTTTGA 1389 0.4528 MAQPHSTSNSTLTPPPSTSAGNNESSRASPSSSRHGRVDDQNSAEPIVSYAGTVIGWGFGDASSAVREDAWSCFAVVFTFWFFVSVTIILGVYGSTSLMLGPETSIVFQPSPLFVQYLTVENLEEKPGPIVYGTYRYPDLDVITTWIETLHVTIPSDTHQEWIYYLNTGSEVNISYHLSSESSSVLLVIADGAESLTQWIEYPTYPNSTLSWNVIHGTGMITQKIYSSSSYYIALGNLDEVVQVELNLTVRAYLHNTKNAYYKCALASSSSCTLGIFFPHGNVAILTTPGPQKNASENEWYVKLTYGPRWITYIVGIGGLTMLMYGAFNLLNNLRCAREERAAGAIQNGTAPERGPLLSRKDDDLSSWGSSYDSVSQDDDDLEFPAVGGSAEGNKSVGGNGESSNNTQRLCAICFDAPRDCFFLPCGHCATCFECGTRIAEAAGTCPVCRRNMKKVRKIFTV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211533g00019 462 MobiDBLite consensus disorder prediction 1 37 - -
Stsc211533g00019 462 MobiDBLite consensus disorder prediction 1 42 - -
Stsc211533g00019 462 Pfam Zinc finger, C3HC4 type (RING finger) 408 456 - -
Stsc211533g00019 462 Pfam Domain of unknown function (DUF4793) 220 325 IPR032010 -
Stsc211533g00019 462 ProSiteProfiles Zinc finger RING-type profile. 411 450 IPR001841 -
Stsc211533g00019 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 462 IPR013083 -
Stsc211533g00019 462 SMART ring_2 411 449 IPR001841 -
Stsc211533g00019 462 FunFam E3 ubiquitin-protein ligase APD2 400 461 - -
Stsc211533g00019 462 MobiDBLite consensus disorder prediction 347 403 - -
Stsc211533g00019 462 Pfam Domain of unknown function (DUF4792) 128 196 IPR032008 -
Stsc211533g00019 462 SUPERFAMILY RING/U-box 410 456 - -
Stsc211533g00019 462 PANTHER OS05G0521000 PROTEIN 61 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211533g00019 Stsc-Chr211533 124686 129301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211533g00019 388 459 C3H Transcription Factor Family AT3G06140 30.556 6.77e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211533g00019 - - ahf:112743648 731.095