Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211531g00003 ATGGTTTGCACTGCCAATGATTTACAACAATGGAAGGATTTCCCAAAGGGACTCAAGGTTCTTCTCCTTGAAGGAGACGCCGGTTCCGCCGCCGAGATAAAACCAAAGCTTGAAGCCATGGACTATAATGTTTCTGCTTTCTGCGATGAGAACGAAGCCTTATCGGCGATCTCAAGTAGATCCGAAAGCTTCCACATTGCCATAGTGGAGGTGAGTATAAATGGCGGTCGAGGAGGTTTCAAATTTCTGGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAATGATCATTGCCTGAGCACTATGATGAAATGCATAGCGCTCGGTGCAGTCGAGTTCCTTCACAAGCCTCTCTCCGAGGACAAGCTTAGAAATATATGGCAGCATGTGGTTCACAAGGCATTCAGTGCTACTGCAAGTTCTGTGGCCGAATCGTTAAAGCCGGTCAAAGAATCTGTAGTATCCATGTTAAAGCTTGAAACAGATAATGAAAAACAAGAGAGTACATATACTAATGATGATCATGATCCTGGAAGTGATAAGTATCCGGCTCCATCGACCCCGCAATTGAATCAGGTTTCAAGACTAATGGACGATGGCGATTGCCATGAGCAGACTAATTGCTCAACAGAAAAGGACAGCGGGGAACATGATGGAGAAGGAGAATCGAAATCCGTCGAAACTACATGTGGAAATTTGAATACCGAAAGTAGTAATAACAAGAACACTGAAAACACTTTGGTCAAGAATGAAGAGGATTTAGCTAAAGGCTCTAGGGATGAGAAAAATGATAGTTCTGTTTATACACAAACACATGATAAGGTTCTCAGCAGTGGTGATGGTAATACAAAGTCTTCAAATAAGGTGGATTCGAGCGCGTTGAAAGCTCATCGGAAGAAGATGAAGGTAGACTGGACACCTGACCTTCACAAAAAATTTGTGAAGGCGGTTGAACAACTAGGCCTCGACCAAGCCATTCCGTCTCGAATATTGGAACTAATGAAAGTGGAGGGATTAACAAGGCATAATGTTGCAAGCCATCTTCAGAAATACCGGATGCATAAGAGGCAAATATTGCCCAAGGAAGAAGGTAGGAAATGGCTAAATCAAAGAGACCAAATGCAAAGGAGCTATTGTCTTCAACGGCCGATAATGCCGTTTCCACCGAATCATTCTAACCACACCCTTTCTCCAGCTCCTATATACCCTATGTGGAGGCAATCCGGCGGCCAAACAGCAGCTATGCCGGTTTGGGGCCCTCCTAGTTACCCTCCAATGTGGCATCCTACAGAAAGTTGGCACTGGAAGCCACTTCCCGGGTTACAGATGCACGCGGATGCATGGGGCTGCCCGGTTCTGCCGCCTCCTCAGGCTCCTCTTCCTTGCTTTTCCTACCCTCAGAATATCCCCGGCATGCACCATACTAATTATATGGATTACAACTCAATCATGCCACAGAGTTCCCCTGATCTTCATCTGGCCGATGAGGTTGTGGACAAGGTAGTGAAGGAAGCAATAAGCAAGCCATGGCTACCATTACCCCTAGGCCTCAAACCGCCTTCCACAGATAGTGTGCTGGCCGAGCTTTCCCGAAAAGGCATATCAACCGTCCCTCCACGTACCAAGGGCTCCTAA 1638 0.4628 MVCTANDLQQWKDFPKGLKVLLLEGDAGSAAEIKPKLEAMDYNVSAFCDENEALSAISSRSESFHIAIVEVSINGGRGGFKFLENAKDLPTIMTSNDHCLSTMMKCIALGAVEFLHKPLSEDKLRNIWQHVVHKAFSATASSVAESLKPVKESVVSMLKLETDNEKQESTYTNDDHDPGSDKYPAPSTPQLNQVSRLMDDGDCHEQTNCSTEKDSGEHDGEGESKSVETTCGNLNTESSNNKNTENTLVKNEEDLAKGSRDEKNDSSVYTQTHDKVLSSGDGNTKSSNKVDSSALKAHRKKMKVDWTPDLHKKFVKAVEQLGLDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQILPKEEGRKWLNQRDQMQRSYCLQRPIMPFPPNHSNHTLSPAPIYPMWRQSGGQTAAMPVWGPPSYPPMWHPTESWHWKPLPGLQMHADAWGCPVLPPPQAPLPCFSYPQNIPGMHHTNYMDYNSIMPQSSPDLHLADEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRKGISTVPPRTKGS 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211531g00003 545 MobiDBLite consensus disorder prediction 270 291 - -
Stsc211531g00003 545 SMART REC_2 18 128 IPR001789 GO:0000160
Stsc211531g00003 545 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Stsc211531g00003 545 Gene3D - 297 359 - -
Stsc211531g00003 545 MobiDBLite consensus disorder prediction 247 269 - -
Stsc211531g00003 545 FunFam Two-component response regulator-like APRR2 17 143 - -
Stsc211531g00003 545 Pfam Myb-like DNA-binding domain 304 353 IPR001005 -
Stsc211531g00003 545 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 541 IPR044825 GO:0003700|GO:0045893
Stsc211531g00003 545 MobiDBLite consensus disorder prediction 198 225 - -
Stsc211531g00003 545 FunFam Two-component response regulator 297 360 - -
Stsc211531g00003 545 NCBIfam myb-like DNA-binding domain, SHAQKYF class 301 356 IPR006447 GO:0003677
Stsc211531g00003 545 MobiDBLite consensus disorder prediction 160 296 - -
Stsc211531g00003 545 SUPERFAMILY Homeodomain-like 299 358 IPR009057 -
Stsc211531g00003 545 MobiDBLite consensus disorder prediction 523 545 - -
Stsc211531g00003 545 Gene3D - 18 145 - -
Stsc211531g00003 545 SUPERFAMILY CheY-like 16 134 IPR011006 -
Stsc211531g00003 545 MobiDBLite consensus disorder prediction 160 181 - -
Stsc211531g00003 545 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Stsc211531g00003 545 MobiDBLite consensus disorder prediction 226 246 - -
Stsc211531g00003 545 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 298 357 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211531g00003 Stsc-Chr211531 28350 32273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211531g00003 1 539 Response Regulator Gene Family AT4G18020 51.937 1.27e-147 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc211531g00003 Response_reg 5.4e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211531g00003 - - gmx:100784905 715.687