Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211530g00015 ATGGTTCTTTCTGAAACCGCTACCGGCAGCGATGTCTCCGTCCACTCTACGTTCGCCTCGCGCTACGTCCGCGCCTCCCTTCCCAGGTTTAGGATGCCGGAGAATTCAATACCAAAGGAAGCAGCGTATCAGATAATAAACGATGAGCTGATGCTGGACGGGAATCCAAGGCTGAATCTGGCGTCGTTCGTAACGACATGGATGGAGCCTGAATGTGACAAGCTCATCATGGCTGCCATTAACAAGAACTACGTTGATATGGACGAGTACCCTGTCACCACTGAGCTCCAGAACCGGTGTGTGAACATGATAGCACATCTATTCAATGCACCACTTGAAGATGGAGAGCCAGCAGTTGGGGTTGGAACAGTTGGGTCCTCAGAGGCCATAATGTTGGCTGGTTTGGCATTCAAACGAAAGTGGCAGAACAGAAGGAAGGAACAGGGCTTGCCTTATGACAAACCCAACATTGTCACTGGTGCCAATGTTCAGGTTTGTTGGGAGAAATTCGCCAGGTATTTCGAGGTCGAACTCAAAGAGGTCAAGCTTCGTGATGATTACTATGTCATGGACCCCGAGTTGGCCGTCGACATGGTCGACGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACTCTCAATGGAGAGTTTGAAGATGTCAAGCACCTTAATGACCTCCTTGAACAAAAGAATAAGGAAACAGGATGGGAGACTCCAATTCACGTGGATGCAGCAAGTGGGGGATTCATAGCACCATTTCTATATCCAGATCTTGAATGGGATTTTAGGTTGCCATTGGTGAAGAGCATTAATGTTAGTGGGCACAAGTATGGTCTTGTCTATGCTGGCATTGGTTGGTCCATTTGGAGAAGCAAAGAAGACCTTCCTGAGGAACTCATCTTCCATATTAACTATCTTGGTGCTGATCAACCCACTTTTACTCTCAACTTCTCCAAAGGTTCTAGCCAGGTTATTGCTCAGTATTACCAGCTAATTCGTTTGGGTTTTGAGGGATATAAAAATGTCATGGAAAATTGTAGAGATAACATGATAGTACTCAAGGAGGGTCTTGAGAAAACAGATCGCTTTAAAATTGTATCCAAAGACAACGGTGTGCCGTTGGTGGCCTTCACACTCAAGGACAATAGCCACTTCAACGAGTTCCAAGTCTCGGACTTCTTGCGTCGCTTTGGTTGGATAGTGCCGGCATACACCATGCCTCCAGACGCGCAGCACGTAACTGTGCTGCGTGTTGTCATCAGGGAGGACTTCTCGCGCACCCTAGCGGAGCGCCTTGTTCTCGATATCCAGAAAGTGTTGCATGAGCTGGAAATGCTTCCTGCAAGGGTAGTGTCCAACACCACTGTAAATGCTGATGGAGAAGTATTGAACAACAATGTGAAAGTCAAGAAGAGTGAATTGGAAACACAAAGGGAAATCACCATGGTTTGGAAGAAGTTTGTGATGGAGAGGAAGAAGATGAATGAGAAGATGAATGGTGTTTGTTAG 1512 0.4676 MVLSETATGSDVSVHSTFASRYVRASLPRFRMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEDGEPAVGVGTVGSSEAIMLAGLAFKRKWQNRRKEQGLPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLRDDYYVMDPELAVDMVDENTICVAAILGSTLNGEFEDVKHLNDLLEQKNKETGWETPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWSIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYKNVMENCRDNMIVLKEGLEKTDRFKIVSKDNGVPLVAFTLKDNSHFNEFQVSDFLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVLDIQKVLHELEMLPARVVSNTTVNADGEVLNNNVKVKKSELETQREITMVWKKFVMERKKMNEKMNGVC 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211530g00015 503 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Stsc211530g00015 503 NCBIfam glutamate decarboxylase 16 445 IPR010107 GO:0004351|GO:0006536|GO:0030170
Stsc211530g00015 503 PANTHER GLUTAMATE DECARBOXYLASE 1 494 IPR010107 GO:0004351|GO:0006536|GO:0030170
Stsc211530g00015 503 FunFam Glutamate decarboxylase 361 448 - -
Stsc211530g00015 503 Gene3D - 1 65 - -
Stsc211530g00015 503 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Stsc211530g00015 503 FunFam Glutamate decarboxylase 1 65 - -
Stsc211530g00015 503 Gene3D - 361 448 - -
Stsc211530g00015 503 FunFam Glutamate decarboxylase 66 360 - -
Stsc211530g00015 503 Gene3D - 66 360 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211530g00015 Stsc-Chr211530 89956 100065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211530g00015 1 503 Calmodulin-binding Proteins AT5G17330 82.213 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211530g00015 K01580 - gmx:100796533 911.753