Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211530g00008 ATGGTTTACAAACTAACCCCTATTGCTTTGCGGTACCTGAAAACTGACTTTATCTTTGATTTTCTTGGATGTATGCCTTGGGATAAGCTATACAAGGTTTGTGGAAGAAAAGAGGAAGTTAGGTACCTGTTGTGGATCAGATTATATCGGGTGCGGAAAGTCACTGATTTTTTCCATAGGTTGGAGAAGGATATACGTATTAACTACATTATTACAAGGATTGTGAAACTTTTAGCAGTTGAACTCTACTGCACCCACACTGCAGCCTGCATTTTCTACTATTTGGCTACTACATTACCTGAATCCCAAGAAGACTACACATGGATCGGAAGTTTACAGCTCGGTGGTTATAGTTATCAACACTTCAGAGAGATTGATCTTTGGAAGCGATACACCACATCATTGTATTTCGCTATCGTTACAATGGCTACTGTTGGCTATGGAGATATACATGCAGTAAACATGAGGGAGATGATATTCATAATGATATATGTCTCATTCGACATGGTTCTTGGTGCTTATTTGATCGGTAACATGACAGCTTTGATAGTCAAGGGATCAAAAACTGAGAAATTTAGGGACAAGATGACAGATCTTATGAAATATATGAATAGAAATAGACTTGGAAGGGATATCCGTGAACAAATAAAAGGTCATCTGCGCTTACAGTTTGAGAGTAGCTATACTGAGGCTGCTGTCCTTCAGGAAATTCCCATTTCTATTCGCTCTAAGATATCTCAAACATTATACTTGCCATGCATTGAAAAGGTTTCTCTTTTTAAGGGATGTTCATCAGAATTCATCAATCAGATAGTTACTAGGCTCCATGAGGAATTTTTTCTTCCAGGAGAGGTTATCATGGAACAAGGAAATGTGGTGGATCAACTATACTTTGTCTGTCATGGTGTGCTGGAGTTAGTAGGCACTGCAGAGGATGGGACTGAAGAAACTGTTTCACTTCTGGAACTTAACAGTTCATTTGGAGAGATATCAATTCTTTGCAACATTCCTCAACCATATACCGTTCGTGTCTGTGAACTCTGTAGGCTTCTGCGTCTTGATAAACAATCGTTTACCAATATCCTTGATATATACTTTTATGATGGAAGGAAGATATTGAACAACCTTCTTGAGGGAAAAGAGACTCCTCGTGGTAAGCAATTAGAGTCAGACATTACATTTCATATTGGAAAGCAAGAAGCTGAACTTGCTTTGAAGGTCAACAATGCAGCTTTTAATGGGGATCTGTATCAGCTAAAAGGTTTAGTTAGAGCTGGAGCTGATCCCAACAAGACAGATTACGATGGAAGATCACCTTTGCATCTTGCTGCATCCAGAGGATATGAAGACATCACACTTTTCCTTATTCAAGAAGGTGTCGACGTCAATATTGCCGATAATTTTGGGAACACACCATTACTTGAAGCAGTTAAGAGTGGACATGATCGAGTTGCGTCTTTACTTGTTAGAGAAGGAGCCACCATGAAGATAGAAAATGGTGGTAGTTTTCTATGTACAGCAGTTGCAAGGGGAGACTCAGATTATCTTAAAAGGCTACTGTGTAATGGCATGGATCCCAACTTGAAAGATTATGATTACCGATGCCCTTTGCATGTGGCTGCAGCTGAAGGCTTATACTTTATGGCAAAGTTGCTATTAGTATCAGGAGCTAGTGTTTTTACCAAGGACAGATGGGGGAATACCCCACTTGATGAAGCCAGAATGAGTGGGAATCAGAACCTAATCAAACTGCTAGAAGATGCAAAATCGGCTCAGTTGTCAGAACTTCATTCTCGCTCACAAGAACTTACAGATAAAATGCATCCAAAGAAGTGTACGGTGTACCCTTTCCACCCGTGGGATACAAAAGATGAGACAAAACATGGCATTGTATTATGGGTTCCGCACACCATTGAAGAGCTAATAAAAATGGCAGCAGAGCAATTTGAGTTTTCTAGTGATTCTAGTATTATTCTTTTATCAGAAGATGCTGGTAAAATTACTGATGTGGACATGATTAAGGATGATCAGAAACTGTATTTAGTTAATCAAACACATTAG 2061 0.3925 MVYKLTPIALRYLKTDFIFDFLGCMPWDKLYKVCGRKEEVRYLLWIRLYRVRKVTDFFHRLEKDIRINYIITRIVKLLAVELYCTHTAACIFYYLATTLPESQEDYTWIGSLQLGGYSYQHFREIDLWKRYTTSLYFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYMNRNRLGRDIREQIKGHLRLQFESSYTEAAVLQEIPISIRSKISQTLYLPCIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLELVGTAEDGTEETVSLLELNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLEGKETPRGKQLESDITFHIGKQEAELALKVNNAAFNGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGYEDITLFLIQEGVDVNIADNFGNTPLLEAVKSGHDRVASLLVREGATMKIENGGSFLCTAVARGDSDYLKRLLCNGMDPNLKDYDYRCPLHVAAAEGLYFMAKLLLVSGASVFTKDRWGNTPLDEARMSGNQNLIKLLEDAKSAQLSELHSRSQELTDKMHPKKCTVYPFHPWDTKDETKHGIVLWVPHTIEELIKMAAEQFEFSSDSSIILLSEDAGKITDVDMIKDDQKLYLVNQTH 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211530g00008 686 ProSiteProfiles Ankyrin repeat region circular profile. 532 564 - -
Stsc211530g00008 686 ProSiteProfiles Ankyrin repeat profile. 532 564 IPR002110 GO:0005515
Stsc211530g00008 686 ProSiteProfiles Ankyrin repeat region circular profile. 468 499 - -
Stsc211530g00008 686 Pfam Cyclic nucleotide-binding domain 279 363 IPR000595 -
Stsc211530g00008 686 FunFam Potassium channel KAT2 247 383 - -
Stsc211530g00008 686 PANTHER POTASSIUM CHANNEL AKT1 2 683 IPR045319 GO:0005249|GO:0006813
Stsc211530g00008 686 Pfam Ankyrin repeats (3 copies) 409 497 IPR002110 GO:0005515
Stsc211530g00008 686 Pfam Ankyrin repeats (3 copies) 505 586 IPR002110 GO:0005515
Stsc211530g00008 686 PRINTS Ankyrin repeat signature 548 562 IPR002110 GO:0005515
Stsc211530g00008 686 PRINTS Ankyrin repeat signature 436 451 IPR002110 GO:0005515
Stsc211530g00008 686 ProSiteProfiles Ankyrin repeat profile. 435 467 IPR002110 GO:0005515
Stsc211530g00008 686 Gene3D - 2 185 - -
Stsc211530g00008 686 ProSiteProfiles Ankyrin repeat profile. 468 500 IPR002110 GO:0005515
Stsc211530g00008 686 Gene3D Jelly Rolls 243 380 IPR014710 -
Stsc211530g00008 686 ProSiteProfiles Ankyrin repeat region circular profile. 435 467 - -
Stsc211530g00008 686 SMART cnmp_10 259 377 IPR000595 -
Stsc211530g00008 686 SUPERFAMILY cAMP-binding domain-like 187 377 IPR018490 -
Stsc211530g00008 686 CDD CAP_ED 259 373 IPR000595 -
Stsc211530g00008 686 SMART ANK_2a 532 561 IPR002110 GO:0005515
Stsc211530g00008 686 SMART ANK_2a 468 497 IPR002110 GO:0005515
Stsc211530g00008 686 SMART ANK_2a 565 595 IPR002110 GO:0005515
Stsc211530g00008 686 SMART ANK_2a 499 528 IPR002110 GO:0005515
Stsc211530g00008 686 SMART ANK_2a 435 464 IPR002110 GO:0005515
Stsc211530g00008 686 SUPERFAMILY Voltage-gated potassium channels 7 184 - -
Stsc211530g00008 686 SUPERFAMILY Ankyrin repeat 408 587 IPR036770 -
Stsc211530g00008 686 ProSiteProfiles KHA domain profile. 611 686 IPR021789 -
Stsc211530g00008 686 Gene3D - 500 599 IPR036770 -
Stsc211530g00008 686 ProSiteProfiles Ankyrin repeat profile. 499 531 IPR002110 GO:0005515
Stsc211530g00008 686 Gene3D Helix hairpin bin 186 242 - -
Stsc211530g00008 686 Pfam KHA, dimerisation domain of potassium ion channel 610 681 IPR021789 -
Stsc211530g00008 686 ProSiteProfiles cAMP/cGMP binding motif profile. 259 379 IPR000595 -
Stsc211530g00008 686 Pfam Ion transport protein 8 184 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc211530g00008 686 Gene3D - 392 499 IPR036770 -
Stsc211530g00008 686 PRINTS EAG/ELK/ERG potassium channel family signature 131 148 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc211530g00008 686 PRINTS EAG/ELK/ERG potassium channel family signature 83 93 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc211530g00008 686 PRINTS EAG/ELK/ERG potassium channel family signature 175 184 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211530g00008 Stsc-Chr211530 50399 57497 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211530g00008 506 585 Ion Channels AT5G37500 34.314 7.44e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211530g00008 K21867 - gmx:100814385 1224.54