Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211530g00007 ATGAGCGCCGCCGGAAACAATAAGAAAGTAGTTAAGGTGGCCGTGGAAGAACAGAACGATAAACGGAGGACGACGAGGAGGACGGATTCTTCTTCGTCGACGTCGTCAACGGAGTCGTTTTCTTCAGACGAGAGGGAGTACGAAGTGCAGGACCTCCATGACCGGCTGAAATCGTCGCGAGGGAGCAGGTTTGACCTCATCGAGAACGAGTTAGGACTCAACTCGGCTCGGAGGAAGTTCAGTCGTCAAGCGCTCCTCGATGGAATCCGAGACCTCTCTAAGAAGGACCTGTACATCCACCCCGAAAACAGGTGGTATCGGTTATGGACAAAATTCATATTGGTATGGGCAGTGTATTCATCATTTTTCACTCCAATGGAGTTTGGATTCTTTCGTGGCTTGCCCGAGAATCTCTATATACTGGATATCATAGGGCAGCTAGCTTTTCTTGTCGACATAATTTTGCAGTTCTTTCTTGCTTACAGAGATAGTCAGACATATCGCATGGTTTACAAACTAACCCCTATTGCTTTGCGGTACCTGAAAACTGACTTTATCTTTGATTTTCTTGGATGTATGCCTTGGGATAAGCTATACAAGGTTTGTGGAAGAAAAGAGGAAGTTAGGTACCTGTTGTGGATCAGATTATATCGGGTGCGGAAAGTCACTGATTTTTTCCATAGGTTGGAGAAGGATATACGTATTAACTACATTATTACAAGGATTGTGAAACTTTTAGCAGTTGAACTCTACTGCACCCACACTGCAGCCTGCATTTTCTACTATTTGGCTACTACATTACCTGAATCCCAAGAAGACTACACATGGATCGGAAGTTTACAGCTCGGTGGTTATAGTTATCAACACTTCAGAGAGATTGATCTTTGGAAGCGATACACCACATCATTGTATTTCGCTATCGTTACAATGGCTACTGTTGGCTATGGAGATATACATGCAGTAAACATGAGGGAGATGATATTCATAATGATATATGTCTCATTCGACATGGTTCTTGGTGCTTATTTGATCGGTAACATGACAGCTTTGATAGTCAAGGGATCAAAAACTGAGAAATTTAGGGACAAGATGACAGATCTTATGAAATATATGAATAGAAATAGACTTGGAAGGGATATCCGTGAACAAATAAAAGGTCATCTGCGCTTACAGTTTGAGAGTAGCTATACTGAGGCTGCTGTCCTTCAGGAAATTCCCATTTCTATTCGCTCTAAGATATCTCAAACATTATACTTGCCATGCATTGAAAAGGTTTCTCTTTTTAAGGGATGTTCATCAGAATTCATCAATCAGATAGTTACTAGGCTCCATGAGGAATTTTTTCTTCCAGGAGAGGTTATCATGGAACAAGGAAATGTGGTGGATCAACTATACTTTGTCTGTCATGGTGTGCTGGAGTTAGTAGGCACTGCAGAGGATGGGACTGAAGAAACTGTTTCACTTCTGGAACTTAACAGTTCATTTGGAGAGATATCAATTCTTTGCAACATTCCTCAACCATATACCGTTCGTGTCTGTGAACTCTGTAGGCTTCTGCGTCTTGATAAACAATCGTTTACCAATATCCTTGATATATACTTTTATGATGGAAGGAAGATATTGAACAACCTTCTTGAGGGAAAAGAGACTCCTCGTGGTAAGCAATTAGAGTCAGACATTACATTTCATATTGGAAAGCAAGAAGCTGAACTTGCTTTGAAGGTCAACAATGCAGCTTTTAATGGGGATCTGTATCAGCTAAAAGGTTTAGTTAGAGCTGGAGCTGATCCCAACAAGACAGATTACGATGGAAGATCACCTTTGCATCTTGCTGCATCCAGAGGATATGAAGACATCACACTTTTCCTTATTCAAGAAGGTGTCGACGTCAATATTGCCGATAATTTTGGGAACACACCATTACTTGAAGCAGTTAAGAGTGGACATGATCGAGTTGCGTCTTTACTTGTTAGAGAAGGAGCCACCATGAAGATAGAAAATGGTGGTAGTTTTCTATGTACAGCAGTTGCAAGGGGAGACTCAGATTATCTTAAAAGGCTACTGTGTAATGGCATGGATCCCAACTTGAAAGATTATGATTACCGATGCCCTTTGCATGTGGCTGCAGCTGAAGGCTTATACTTTATGGCAAAGTTGCTATTAGTATCAGGAGCTAGTGTTTTTACCAAGGACAGATGGGGGAATACCCCACTTGATGAAGCCAGAATGAGTGGGAATCAGAACCTAATCAAACTGCTAGAAGATGCAAAATCGGCTCAGTTGTCAGAACTTCATTCTCGCTCACAAGAACTTACAGATAAAATGCATCCAAAGAAGTGTACGGTGTACCCTTTCCACCCGTGGGATACAAAAGATGAGACAAAACATGGCATTGTATTATGGGTTCCGCACACCATTGAAGAGCTAATAAAAATGGCAGCAGAGCAATTTGAGTTTTCTAGTGATTCTAGTATTATTCTTTTATCAGAAGATGCTGGTAAAATTACTGATGTGGACATGATTAAGGATGATCAGAAACTGTATTTAGTTAATCAAACACATTAG 2565 0.4105 MSAAGNNKKVVKVAVEEQNDKRRTTRRTDSSSSTSSTESFSSDEREYEVQDLHDRLKSSRGSRFDLIENELGLNSARRKFSRQALLDGIRDLSKKDLYIHPENRWYRLWTKFILVWAVYSSFFTPMEFGFFRGLPENLYILDIIGQLAFLVDIILQFFLAYRDSQTYRMVYKLTPIALRYLKTDFIFDFLGCMPWDKLYKVCGRKEEVRYLLWIRLYRVRKVTDFFHRLEKDIRINYIITRIVKLLAVELYCTHTAACIFYYLATTLPESQEDYTWIGSLQLGGYSYQHFREIDLWKRYTTSLYFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYMNRNRLGRDIREQIKGHLRLQFESSYTEAAVLQEIPISIRSKISQTLYLPCIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLELVGTAEDGTEETVSLLELNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLEGKETPRGKQLESDITFHIGKQEAELALKVNNAAFNGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGYEDITLFLIQEGVDVNIADNFGNTPLLEAVKSGHDRVASLLVREGATMKIENGGSFLCTAVARGDSDYLKRLLCNGMDPNLKDYDYRCPLHVAAAEGLYFMAKLLLVSGASVFTKDRWGNTPLDEARMSGNQNLIKLLEDAKSAQLSELHSRSQELTDKMHPKKCTVYPFHPWDTKDETKHGIVLWVPHTIEELIKMAAEQFEFSSDSSIILLSEDAGKITDVDMIKDDQKLYLVNQTH 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211530g00007 854 FunFam Potassium channel SKOR 107 352 - -
Stsc211530g00007 854 Pfam Ion transport protein 107 352 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc211530g00007 854 ProSiteProfiles Ankyrin repeat profile. 603 635 IPR002110 GO:0005515
Stsc211530g00007 854 ProSiteProfiles Ankyrin repeat profile. 667 699 IPR002110 GO:0005515
Stsc211530g00007 854 ProSiteProfiles KHA domain profile. 779 854 IPR021789 -
Stsc211530g00007 854 PANTHER POTASSIUM CHANNEL AKT1 79 851 IPR045319 GO:0005249|GO:0006813
Stsc211530g00007 854 SMART ANK_2a 700 729 IPR002110 GO:0005515
Stsc211530g00007 854 SMART ANK_2a 636 665 IPR002110 GO:0005515
Stsc211530g00007 854 SMART ANK_2a 733 763 IPR002110 GO:0005515
Stsc211530g00007 854 SMART ANK_2a 667 696 IPR002110 GO:0005515
Stsc211530g00007 854 SMART ANK_2a 603 632 IPR002110 GO:0005515
Stsc211530g00007 854 Gene3D - 668 767 IPR036770 -
Stsc211530g00007 854 Gene3D - 108 353 - -
Stsc211530g00007 854 Pfam KHA, dimerisation domain of potassium ion channel 778 849 IPR021789 -
Stsc211530g00007 854 MobiDBLite consensus disorder prediction 13 28 - -
Stsc211530g00007 854 SUPERFAMILY cAMP-binding domain-like 355 545 IPR018490 -
Stsc211530g00007 854 MobiDBLite consensus disorder prediction 1 47 - -
Stsc211530g00007 854 FunFam Potassium channel KAT2 415 551 - -
Stsc211530g00007 854 ProSiteProfiles Ankyrin repeat region circular profile. 700 732 - -
Stsc211530g00007 854 ProSiteProfiles Ankyrin repeat profile. 636 668 IPR002110 GO:0005515
Stsc211530g00007 854 Gene3D - 560 667 IPR036770 -
Stsc211530g00007 854 Gene3D Helix hairpin bin 354 410 - -
Stsc211530g00007 854 ProSiteProfiles cAMP/cGMP binding motif profile. 427 547 IPR000595 -
Stsc211530g00007 854 SMART cnmp_10 427 545 IPR000595 -
Stsc211530g00007 854 CDD CAP_ED 427 541 IPR000595 -
Stsc211530g00007 854 SUPERFAMILY Ankyrin repeat 576 755 IPR036770 -
Stsc211530g00007 854 ProSiteProfiles Ankyrin repeat profile. 700 732 IPR002110 GO:0005515
Stsc211530g00007 854 ProSiteProfiles Ankyrin repeat region circular profile. 636 667 - -
Stsc211530g00007 854 ProSiteProfiles Ankyrin repeat region circular profile. 603 635 - -
Stsc211530g00007 854 Gene3D Jelly Rolls 411 548 IPR014710 -
Stsc211530g00007 854 SUPERFAMILY Voltage-gated potassium channels 101 352 - -
Stsc211530g00007 854 Pfam Cyclic nucleotide-binding domain 447 531 IPR000595 -
Stsc211530g00007 854 PRINTS EAG/ELK/ERG potassium channel family signature 343 352 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc211530g00007 854 PRINTS EAG/ELK/ERG potassium channel family signature 251 261 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc211530g00007 854 PRINTS EAG/ELK/ERG potassium channel family signature 299 316 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc211530g00007 854 PRINTS EAG/ELK/ERG potassium channel family signature 142 152 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc211530g00007 854 Pfam Ankyrin repeats (3 copies) 673 754 IPR002110 GO:0005515
Stsc211530g00007 854 Pfam Ankyrin repeats (3 copies) 577 665 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211530g00007 Stsc-Chr211530 50399 57549 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211530g00007 674 753 Ion Channels AT5G37500 34.314 8.47e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211530g00007 K21867 - gmx:100814385 1449.11