Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211530g00003 ATGGTAGAAGGCAAAGCAGTTGAACGTTGGGCCATTCTTGATTTTACTAGTTCTGGGTCATATAAGCATCAATTGAGAGTCAACGAATTCGTTAATAGGCTTATTGGAAAATACCAAAGAATGGGTATAAACATGCAGGAGCCCATTTGGTATGAAGAATCTTCAATGCAGATACTTGCAAGGCATGATTTCCTGTCTGAATTACTTCAAAAAATTAGCAATACTTGTAAACATAATCATGGTCACCTGCAATTTCTCCTGTGTGTGATGACTAAGAAAAGTCCAGGTTACAAGTACCTCAAGTGGATTTCAGAGACCAAAGTTGGTATAGTGACACAATGTTGCTTATCTCATAGTGCTAATGAAGGAGATGACCTATTTTATACTAATCTAGCCCTTAAGATCAATGCCAAGCTTGGAGGCAGTAATGTAGAGCTCAGTCATATGTTCCCTTACTTTGAAGGTGATAGGCATGTTATGTTTGTTGGGGCTGATGTAAATCATCCTGGTTCTTGGGACAACAAGAGTCCATCGATTGCTGCTGTGGTTGCAACTGTTAATTGGCCTGCAGCAAATCGTTATGCAGCACGTGTTTGCCCTCAGTACAATCGGAGCGAGAAAATACTGAACTTTGGGGAAGTTTGCTCTGAGCTTGTTGCATGTTATAGCAGGATGAATGGAGTCAGGCCAGAAAGAATCATCATTTTTCGTGATGGGGTGAGTGAGTACCAGTTTGATATGGTTCTTAATGAAGAGCTACATGATTTGAAGAGAGAATTCCAAAGATTAAACTACTTCCCTACAATCACTCTTATTGTAGCACAAAAAAGACATCAAACTCGATTCTTTCCGGAGGGTTGGAAGGATGGATCTTCCAGTGGCAATATTTTGCCGGGGACGGTTGTTGATGCAAAAGTTACTCACCCTTTTGAGTTTGACTTCTACCTATGTAGTTACTATGGAAGCATAGGTACCAGCAAACCTACTCATTACCATGTTTTATGGGATGAACACAAGTTTAAATCTGATGAATTGCAGAAGCTTATATATGACATGTGCTTCACCTTTGCAAAGTGCAGTAAACCTGTATCCTTAGTTCCTCCGGTGTACTATGCTGACCTCACTGCTTATAGAGGACGATTATACCATGAAGCACGGGTTGGGATGCAATCTATGAGATCAGTAGGATCCTCATCTTCGAAGGCTTCTTTTGAGCAAGGATTTTACAGGTTGCATCCTGACTTGGAAAACATGATGTTCTTCATCTAA 1269 0.4043 MVEGKAVERWAILDFTSSGSYKHQLRVNEFVNRLIGKYQRMGINMQEPIWYEESSMQILARHDFLSELLQKISNTCKHNHGHLQFLLCVMTKKSPGYKYLKWISETKVGIVTQCCLSHSANEGDDLFYTNLALKINAKLGGSNVELSHMFPYFEGDRHVMFVGADVNHPGSWDNKSPSIAAVVATVNWPAANRYAARVCPQYNRSEKILNFGEVCSELVACYSRMNGVRPERIIIFRDGVSEYQFDMVLNEELHDLKREFQRLNYFPTITLIVAQKRHQTRFFPEGWKDGSSSGNILPGTVVDAKVTHPFEFDFYLCSYYGSIGTSKPTHYHVLWDEHKFKSDELQKLIYDMCFTFAKCSKPVSLVPPVYYADLTAYRGRLYHEARVGMQSMRSVGSSSSKASFEQGFYRLHPDLENMMFFI 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211530g00003 422 ProSiteProfiles Piwi domain profile. 85 384 IPR003165 GO:0003676
Stsc211530g00003 422 Pfam Piwi domain 86 380 IPR003165 GO:0003676
Stsc211530g00003 422 Gene3D - 1 146 - -
Stsc211530g00003 422 SMART Piwi_a_2 85 383 IPR003165 GO:0003676
Stsc211530g00003 422 Gene3D - 154 422 IPR036397 GO:0003676
Stsc211530g00003 422 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1 385 - -
Stsc211530g00003 422 SUPERFAMILY Ribonuclease H-like 79 384 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211530g00003 Stsc-Chr211530 3844 6579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211530g00003 1 403 Eukaryotic Initiation Factors Gene Family AT5G43810 39.627 3.04e-88 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211530g00003 K11593 - gmx:100783571 699.893