Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211530g00002 ATGAAGACTATTCTCTCTTCCGAGACTATGAACATTCCCGAAGGCGTGAGCATCAAGATTCACGCTAAGGTCATAGAGGTTGAAGGTCCCAGGGGCAAGCTCGTACGTGATTTCAAGCATCTCAACCTTGATTTCCAGCTCATCAAGGACGAGAACGGCCAGAAGAAGCTCAAGATCGACGCCTGGTTTGGCTCCCGGAAAACCTCCGCCGCCATCCGCACCGCCCTCAGCCACGTCGAGAATCTCATCACCGGCGTCACCAAGGGCTACCGTTACAAGATGAGATTCGTCTATGCTCACTTTCCTATCAACGCCAGCATCTCCAGCAACAACGCCTCCATCGAGATCCGTAACTTCCTTGGCGAGAAGAAGGTGAGGAAAGTGGACATGCTTGAGGGAGTCTCTGTGGTAAGATCCGAGAAGGTGAAGGATGAACTCATTTTGGATGGAAATGACATTGAGCTTGTGTCTCGATCCTGCGCCCTAATTAACCAGAAATGCCATGTGAAGAACAAGGATATTAGGAAGTTCCTTGACGGTATCTATGTCAGCGAGAAGGGAACAATTGTTGAAGAGNNNNNNNNNNCTCCTATTAGTGGTTTGGAGACAGTTTTTACTTTTTGTAAGCTTGTTGAGATTTTGATTTTTACAGTTTTGTGTTTTATCAAAGTTAGATCTTTTTGGAACATGTCATTTAATTTTATATCATTGCCTCTATATGCATTGCCGCTCTACTATTACTACTTATGGATGGGTCTTTATAGTTTTCATAATCTGTTAATCATGATTAATATTAACAGTTATCCCAGTTAG 813 0.4354 MKTILSSETMNIPEGVSIKIHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDENGQKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASISSNNASIEIRNFLGEKKVRKVDMLEGVSVVRSEKVKDELILDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTIVEEXXXXPISGLETVFTFCKLVEILIFTVLCFIKVRSFWNMSFNFISLPLYALPLYYYYLWMGLYSFHNLLIMININSYPS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211530g00002 270 SUPERFAMILY Ribosomal protein L6 90 186 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc211530g00002 270 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 192 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc211530g00002 270 FunFam 60S ribosomal protein L9 1 89 - -
Stsc211530g00002 270 Gene3D - 90 194 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc211530g00002 270 ProSitePatterns Ribosomal protein L6 signature 2. 165 186 IPR002359 GO:0003735|GO:0005840|GO:0006412
Stsc211530g00002 270 FunFam 60S ribosomal protein L9 90 193 - -
Stsc211530g00002 270 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc211530g00002 270 Pfam Ribosomal protein L6 101 180 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc211530g00002 270 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc211530g00002 270 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211530g00002 Stsc-Chr211530 1763 3013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211530g00002 1 192 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 84.974 7.26e-121 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211530g00002 K02940 - gmx:100306058 351.288