Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211529g00011 ATGGCTTCTGCAACCTTTTTCATCTCTTCCCTTCTCTTTCTTCACATCACACTAGCTTTTGCCAACATTACCATAAATTCAACACTCTCCACCACCACCAACAACAATGCATGGCTTTCACCTTCAGGTGAATTTGCTTTTGGATTCCACCAACTCAAAGACACAAATCTCTTCATAGTTGCCATATGGTATGACAAAATACCAGAAAAAACCATAGTTTGGAATTCATATTCTCACAGCAATCCAACACCAACAGGATCAAAGATTCAGTTAACACCATCAGGTCTACAATTAACTACTCCCAAAGGTGAATCCACATGCATAGCACAAACCAACAACACTGTTTCCCATGGTTCTATGCTTGACACTGGAAACTTTGTTCTTGCAAGCAGTGATAGCAACAACACACTCGTGTGGCAAAGTTTCAAGAACCCCACAGATACTTTGTTGCCAAACCAAACTCTTGAATCTGATGCCACTCTCACTTCTAGATTGAAAGATACAAACTACACAAGAGGGAGGTTTCAACTCTATTTTCAGAATAACACCATCAAGATTAGTCCTCTGGCATGGCCTACTGAATTTCGCTATGAAAACTATGAGGCGATTTCTGTTTCCGGACCTGCTGCTCGCTTGGTGTTTGATGAAAGTGGTGAGATATATGTAGAGACAAAGAGTGGTAACAGAACAACACCACAACGAGCTCCTAAATGGCAATCCAACTTAGCTCTTGATCCTGGGAACAATTACTATAGAGCAACGCTTGATTACTATGGAGTTTTAACTCAATATGTTCATCCAAAGGACTCAAATTCTCAGCAGGGGTGGAGAGTTTTAAGGTACATTCCAAGTAACATTTGCATCAGTATTTTTAATAATTATGGAAGTGGTGCTTGTGGTTACAATAGCTATTGCTCCATGGATGATCAGAGGCCTACTTGCAATTGCCCTGAAGGATATACTCTGATTGATCCAAGCAATGTGTTTGGTGGATGTCAACCGAATTTCACTCTTGGTTGTGGAGCAGATAACCCTGGCGAAGAATTGCAAGCGCGCCCAGAAGAGCTGTATACTTTTAGTGTTTTGAGTGATGTGGATTTTCCCCTTAATGATTATGAGCAGATTCAACCTTACAATCAAGATGAGTGCCAGCAAGATTGTTTACAAGATTGCAATTGTGCTGTTGCAATCTATAACAACAATCAAACCTGCTGGAAGAAGAGGTTGCCTCTTTCTAACGGAAGAACACAAAGTGGAGGCCAAACAATACTTATCAAAACAAGAGTTGCACCTCTTGCAACTCCCACTGGTGCTGAATCAAAGAAAGATGATAATAAGGTTAAGCCAGCTTTTACTGGGTTACTTGTTGGATCGCTTGTCATCAATGTTGTACTACTGACTGCAGTTCTTTTGGTTATTCGCCTGAAAAAGCGAAAAAGGGAAATCAAAGTATCTAGTCTTCTAGAAACAAATCTACATTCGTTTAGCTATGAAGCATTGGAGGATGCGACACGGGGTTTTAGCGAAGAACTGGGAAGAGGTTCCTTTGGCATTGTTTACAAAGGGACCATAGAATCAAGGTTTTATAATGTGGTGGCAGTCAAGAAGCTTGACAGATTGGCGCAAGAACGAGAGAAGGAATTCAGGGCTGAGTTGAGTGCAATTGGTAAAACCTGCCACAAGAATCTGGTAAGGTTGATTGGATTCTGTGATGAGGGAACAAACAGGTTGCTTGTCTACGAGTTCATGAGCAATGGTGCTCTGGCAAACTTCCTATTTGGACAAAGCAAACCCATTTGGGATCTAAGGGTAAGGTTTGCTTTGGGGATTGCAAGAGGGATGGTGTACTTGCATGAAGAGTGTGACACTCCTATCATTCACTGTGATATAAAACCTCAGAATATACTCATAGATGATCACTTCAATGCAAAGATATCTGACTTCGGGTTGGCCAAGTTGTTGTTTTCTGACCAGAGCAGGACCAACACCATGATCCGAGGAACAAGAGGTTATGTTGCTCCAGAATGGTTCAGGAATGTTCCCGTGACGGTTAAGGTGGATGTTTATAGCTTTGGTGTGATGTTACTAGAGATCATCTGCTGCAGAAAGAGTGTGCTGATGTTGGAGTCTGGGGAGGAAGAGAAGGCTGTGCTGACTGATTGGGCTTATGATTGCTATTTAGAAAGGAGAATAGATGCTTTGGTGGATGATGATAAGGTGGCTATAGCTGACAGTGGAAGGTTAGAAAGGTGGGTGAAGATAGCAATTTGGTGCACTCAAGAGGATCATGAAAAGAGGCCAACAATGGGGATGATCTTGCAAATGCTTGAAGGCTTGGTTGAAGTCTCTGATCCCCCATCACCTTTTACTTGA 2373 0.4189 MASATFFISSLLFLHITLAFANITINSTLSTTTNNNAWLSPSGEFAFGFHQLKDTNLFIVAIWYDKIPEKTIVWNSYSHSNPTPTGSKIQLTPSGLQLTTPKGESTCIAQTNNTVSHGSMLDTGNFVLASSDSNNTLVWQSFKNPTDTLLPNQTLESDATLTSRLKDTNYTRGRFQLYFQNNTIKISPLAWPTEFRYENYEAISVSGPAARLVFDESGEIYVETKSGNRTTPQRAPKWQSNLALDPGNNYYRATLDYYGVLTQYVHPKDSNSQQGWRVLRYIPSNICISIFNNYGSGACGYNSYCSMDDQRPTCNCPEGYTLIDPSNVFGGCQPNFTLGCGADNPGEELQARPEELYTFSVLSDVDFPLNDYEQIQPYNQDECQQDCLQDCNCAVAIYNNNQTCWKKRLPLSNGRTQSGGQTILIKTRVAPLATPTGAESKKDDNKVKPAFTGLLVGSLVINVVLLTAVLLVIRLKKRKREIKVSSLLETNLHSFSYEALEDATRGFSEELGRGSFGIVYKGTIESRFYNVVAVKKLDRLAQEREKEFRAELSAIGKTCHKNLVRLIGFCDEGTNRLLVYEFMSNGALANFLFGQSKPIWDLRVRFALGIARGMVYLHEECDTPIIHCDIKPQNILIDDHFNAKISDFGLAKLLFSDQSRTNTMIRGTRGYVAPEWFRNVPVTVKVDVYSFGVMLLEIICCRKSVLMLESGEEEKAVLTDWAYDCYLERRIDALVDDDKVAIADSGRLERWVKIAIWCTQEDHEKRPTMGMILQMLEGLVEVSDPPSPFT 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211529g00011 790 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 18 143 - -
Stsc211529g00011 790 Gene3D Transferase(Phosphotransferase) domain 1 583 784 - -
Stsc211529g00011 790 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 28 787 - -
Stsc211529g00011 790 FunFam S-receptor-like serine/threonine-protein kinase 474 582 - -
Stsc211529g00011 790 CDD PAN_AP_plant 336 427 - -
Stsc211529g00011 790 Pfam PAN-like domain 358 405 IPR003609 -
Stsc211529g00011 790 Gene3D Phosphorylase Kinase; domain 1 469 582 - -
Stsc211529g00011 790 CDD STKc_IRAK 511 779 - -
Stsc211529g00011 790 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 583 784 - -
Stsc211529g00011 790 SMART blect_4 29 145 IPR001480 -
Stsc211529g00011 790 ProSiteProfiles Bulb-type lectin domain profile. 24 141 IPR001480 -
Stsc211529g00011 790 SMART serkin_6 505 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211529g00011 790 ProSiteProfiles Protein kinase domain profile. 505 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211529g00011 790 Gene3D - 21 144 IPR036426 -
Stsc211529g00011 790 Pfam D-mannose binding lectin 72 160 IPR001480 -
Stsc211529g00011 790 Gene3D - 145 272 IPR036426 -
Stsc211529g00011 790 PIRSF SRK 1 790 IPR024171 GO:0004674
Stsc211529g00011 790 Pfam Protein kinase domain 508 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211529g00011 790 ProSiteProfiles PAN/Apple domain profile. 340 430 IPR003609 -
Stsc211529g00011 790 SUPERFAMILY Protein kinase-like (PK-like) 482 777 IPR011009 -
Stsc211529g00011 790 ProSitePatterns Protein kinases ATP-binding region signature. 511 536 IPR017441 GO:0005524
Stsc211529g00011 790 Gene3D Hepatocyte Growth Factor 358 423 - -
Stsc211529g00011 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Stsc211529g00011 790 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 183 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211529g00011 Stsc-Chr211529 61224 63711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211529g00011 423 787 Receptor kinase-like Gene Family AT1G56120 39.200 1.59e-66 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc211529g00011 Pkinase 3.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211529g00011 - - adu:107487498 1343.95