Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211529g00010 ATGTGTGAACAAAGCAGTTACGATTCCGATATGGCGCTACTCGACTCAATTCGCCGCCACTTGCTGGGAGAGGCCGACCCGTTTATTTTCGGAGCTCCGAATTATAATTCGGGTATCGCACCGGTTTTCTGCCGGAGCTCCAGCTTCAGCAGCTTGTACCCTTGCCTGAGCGAAAATTGGGGGGAATTGCCGCTCAAAGAAGACGATTCAGAAGATATGGTTCTATACGGCGTTCTCCGCGACGCTGTAAACGTCGGGTGGGTCCCATCTCTCGAAGCTGGATCACCGGAAGACTTCTCATCGGGTTACTTGCCCGCCGTGACGGTTAAATCGGAGCCGGATCTATTTCCTTCGGTGCCGAGCCTCCTGGAGCCTGTTGTAACCGCCACCGTGGCAGCACCGATGGAAGAGAAACCTACTCCTGTTGCGGCTCCGGCGAAGGGGAAACACTACCGAGGAGTGAGGCAGCGACCGTGGGGGAAGTTCGCGGCGGAGATTCGTGATCCGGCGAAAAACGGTGCTAGGGTTTGGCTGGGAACATTCGAAACCGCGGAGGACGCAGCTTTAGCTTACGACCGCGCCGCCTACAGAATGCGCGGGTCACGAGCACTGTTGAATTTTCCACTCCGGGTGAACTCCGGTGAACCCGATCCCGTTAGGGTGACGTCTAAGCGGTCGTCGCCGGAGCCTTCGTCGTCGTCGGATAGTGGATCGTCGACGAAGAGGAGGAAGAAGGCGGTGGTGAGAGGTCAGGTAGAGATGAAGACAGGGCAAGTGGGGAGTCAAGTGGCTCATTGTACACGTGGCGAGCAGTTATTGGTTAGCTGA 828 0.5664 MCEQSSYDSDMALLDSIRRHLLGEADPFIFGAPNYNSGIAPVFCRSSSFSSLYPCLSENWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLEAGSPEDFSSGYLPAVTVKSEPDLFPSVPSLLEPVVTATVAAPMEEKPTPVAAPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSPEPSSSSDSGSSTKRRKKAVVRGQVEMKTGQVGSQVAHCTRGEQLLVS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211529g00010 275 PANTHER DNA-BINDING DOMAIN 140 241 IPR044808 GO:0003700|GO:0009873
Stsc211529g00010 275 FunFam Ethylene-responsive transcription factor 2 149 209 - -
Stsc211529g00010 275 SMART rav1_2 150 214 IPR001471 GO:0003700|GO:0006355
Stsc211529g00010 275 SUPERFAMILY DNA-binding domain 150 210 IPR016177 GO:0003677
Stsc211529g00010 275 Gene3D AP2/ERF domain 149 211 IPR036955 GO:0003700|GO:0006355
Stsc211529g00010 275 PRINTS Ethylene responsive element binding protein signature 174 190 IPR001471 GO:0003700|GO:0006355
Stsc211529g00010 275 PRINTS Ethylene responsive element binding protein signature 151 162 IPR001471 GO:0003700|GO:0006355
Stsc211529g00010 275 MobiDBLite consensus disorder prediction 212 262 - -
Stsc211529g00010 275 CDD AP2 149 208 IPR001471 GO:0003700|GO:0006355
Stsc211529g00010 275 Pfam AP2 domain 150 200 IPR001471 GO:0003700|GO:0006355
Stsc211529g00010 275 ProSiteProfiles AP2/ERF domain profile. 150 208 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211529g00010 Stsc-Chr211529 55865 57501 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211529g00010 1 274 AP2-EREBP Transcription Factor Family AT4G17500 55.088 1.23e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc211529g00010 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211529g00010 K09286 - gmx:100819649 345.895