Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211529g00009 ATGGAAAACCCTTCCGAGCTGACTGCCCTGAATCTCATCAAACTTCATCTTCTCGGAGAACTCTCATCACCACTTCCTCACAACTCCTCCTTCTCTTTCCAAACTAACCCTACTACTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCTTCCGCTTCGGTCAACCAATACTCTAACCAAATAGTCAACACGCCAACAAGATCCAACTTCCAGGATCAGTCCCCGGCGGTGGAGAAGAAACCTCATCAGTCAACGGCATCTTCGTCCAACCGGAAACCGTCTCTGCAAATCTCACTCCCTAAGAAAACCGAATGGATCCAATTCGGGGAGCAGCACGACGAGAATTCCATCAAGACCACGCAACAACAGAAGAAGCACCACTACAGAGGGGTAAGGCAGAGGCCATGGGGAAAGTACGCCGCCGAGATTCGAGATCCTAACAAGCGAGGCTCCAGGGTTTGGCTTGGAACATTCGACACCGCCATCGATGCCGCCAAGGCTTACGACCGCGCCGCCTTTAAGCTCCGCGGCTCAAAAGCCATCCTCAACTTCCCTCTCGAAGTCGGCGCCCACAACAGGAAGCGCTGTCGTCAGGAGGACGACGAGAACAAGCAGGTTGCAGTGAAGAAGGAGAAGGTGGAGGAATCATCGGACGACGTTAGTGGTATAAGGGATATTCCGTTAACGCCGTCTAGTTGGAGTGGGTTCTGGGACGGTGACGCAAGTGGTATTTTCAGTGTGCCGCCGTTATCGCCGTTATCTCCCCATCCGGCGTTGGGATTTCCACAGCTTATGGTTGTGTGA 810 0.5272 MENPSELTALNLIKLHLLGELSSPLPHNSSFSFQTNPTTSSSSSSSSSSSSSSASVNQYSNQIVNTPTRSNFQDQSPAVEKKPHQSTASSSNRKPSLQISLPKKTEWIQFGEQHDENSIKTTQQQKKHHYRGVRQRPWGKYAAEIRDPNKRGSRVWLGTFDTAIDAAKAYDRAAFKLRGSKAILNFPLEVGAHNRKRCRQEDDENKQVAVKKEKVEESSDDVSGIRDIPLTPSSWSGFWDGDASGIFSVPPLSPLSPHPALGFPQLMVV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211529g00009 269 PRINTS Ethylene responsive element binding protein signature 130 141 IPR001471 GO:0003700|GO:0006355
Stsc211529g00009 269 PRINTS Ethylene responsive element binding protein signature 169 189 IPR001471 GO:0003700|GO:0006355
Stsc211529g00009 269 SMART rav1_2 129 193 IPR001471 GO:0003700|GO:0006355
Stsc211529g00009 269 ProSiteProfiles AP2/ERF domain profile. 129 187 IPR001471 GO:0003700|GO:0006355
Stsc211529g00009 269 PANTHER DNA-BINDING DOMAIN 55 205 IPR044808 GO:0003700|GO:0009873
Stsc211529g00009 269 MobiDBLite consensus disorder prediction 197 224 - -
Stsc211529g00009 269 SUPERFAMILY DNA-binding domain 129 189 IPR016177 GO:0003677
Stsc211529g00009 269 MobiDBLite consensus disorder prediction 24 98 - -
Stsc211529g00009 269 Pfam AP2 domain 129 179 IPR001471 GO:0003700|GO:0006355
Stsc211529g00009 269 CDD AP2 129 187 IPR001471 GO:0003700|GO:0006355
Stsc211529g00009 269 Gene3D AP2/ERF domain 128 189 IPR036955 GO:0003700|GO:0006355
Stsc211529g00009 269 FunFam Ethylene-responsive transcription factor 2 128 189 - -
Stsc211529g00009 269 MobiDBLite consensus disorder prediction 197 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211529g00009 Stsc-Chr211529 46397 47206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211529g00009 90 269 AP2-EREBP Transcription Factor Family AT5G47230 57.527 1.11e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc211529g00009 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211529g00009 K09286 - gmx:100808173 272.707