Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211529g00004 ATGACGACGCTCCAAAACGAAGATTTGGGGCTCACCCTAAGCTTGAGCTTCTCTCACAACAATCCTAATTCAAATCCCCCGCAACTCTCCTACAAACTCCCCTCTTGGAACAACCAACCCCTCAATTCTTCAGATCGAGATTCGGAGACATGCAGAGGTGTTGAAGGCGGATCGTTCCTCCTCCGTGGAATCGACGTGAACAGCTTACCCTCCGGCGTCGACTGCGAAGAAGAGGCCGGAGTATCATCTCCGAACAGCACAGTTTCCAGCGTTAGCGGAAAGAGAAGCAGCGAGAGAGAACAAACTAATGGCGAAGATCACGATTTGGAGAGAGCTTCTTCTAGAGGCATCTCGGACGAAGAAGACGGTGAAACCTCCCGCAAGAAACTGAGGCTCTCTAAGGACCAATCAGCTGTCCTCGAAGAGAGTTTCAAAGAACACAACACTCTCAACCCCAAGCAAAAGTTAGCACTGGCAAAGCAGCTTGGGCTTCGAGCAAGGCAAGTAGAAGTGTGGTTCCAAAACAGAAGGGCGAGGACGAAGCTGAAGCAAACAGAGGTAGACTGTGAGTTTCTAAAGAGGTGCTGTGAGAATCTGACGGAGGAGAATAGGAGACTACAGAAGGAGGTGCAAGAACTGAGAGCACTGAAACTTTCCCCTCAGTTCTACATGCAGATGACCCCTCCAACTACTCTAACCATGTGCCCTTCGTGTGAGCGCGTCGCTGTTCCCCAATCGCCAGTCGATCCCGCCGCGCGTCACCATCACATGCCCAGGCCCATTCCAATTGGGCCGTGGCCCACTACACCAGCTGGTGCTGCTGTCGTTCCTCATGCTCATAGGCCCTTTGATGCCCTCCGCCCCAGGTCGTGA 873 0.5269 MTTLQNEDLGLTLSLSFSHNNPNSNPPQLSYKLPSWNNQPLNSSDRDSETCRGVEGGSFLLRGIDVNSLPSGVDCEEEAGVSSPNSTVSSVSGKRSSEREQTNGEDHDLERASSRGISDEEDGETSRKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPQSPVDPAARHHHMPRPIPIGPWPTTPAGAAVVPHAHRPFDALRPRS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211529g00004 290 MobiDBLite consensus disorder prediction 1 47 - -
Stsc211529g00004 290 MobiDBLite consensus disorder prediction 1 52 - -
Stsc211529g00004 290 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Stsc211529g00004 290 Coils Coil 182 219 - -
Stsc211529g00004 290 Pfam HD-ZIP protein N terminus 5 97 IPR006712 GO:0005634
Stsc211529g00004 290 Pfam Homeobox associated leucine zipper 183 217 IPR003106 GO:0006355|GO:0043565
Stsc211529g00004 290 SMART halz 183 226 IPR003106 GO:0006355|GO:0043565
Stsc211529g00004 290 MobiDBLite consensus disorder prediction 72 133 - -
Stsc211529g00004 290 Gene3D - 131 181 - -
Stsc211529g00004 290 MobiDBLite consensus disorder prediction 80 97 - -
Stsc211529g00004 290 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 246 - -
Stsc211529g00004 290 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Stsc211529g00004 290 SUPERFAMILY Homeodomain-like 114 184 IPR009057 -
Stsc211529g00004 290 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Stsc211529g00004 290 SMART HOX_1 125 187 IPR001356 GO:0003677
Stsc211529g00004 290 PRINTS Lambda-repressor HTH signature 154 163 IPR000047 GO:0003677
Stsc211529g00004 290 PRINTS Lambda-repressor HTH signature 163 179 IPR000047 GO:0003677
Stsc211529g00004 290 FunFam Homeobox-leucine zipper protein 18 113 188 - -
Stsc211529g00004 290 CDD bZIP 176 215 - -
Stsc211529g00004 290 CDD homeodomain 127 184 IPR001356 GO:0003677
Stsc211529g00004 290 MobiDBLite consensus disorder prediction 98 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211529g00004 Stsc-Chr211529 24097 25772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211529g00004 4 290 Homeobox Transcription Factor Family AT5G47370 62.215 2.55e-111 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc211529g00004 HD-ZIP_N 4.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211529g00004 K09338 - gmx:100813367 376.711