Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211528g00026 ATGGACACGCCGAAGACGAACCCTTCCATCTCTCCTTTCGAGGATGAACCTGTATTCATCTTTATGAACGGTTTATCGCCTATAAAGCCCATGAAGTCTGCTCAGATTAGTCAAACATTTAGCTCAGGCAGCTTTCCATCCCCTCCGCGTGTATTTACTTCACCCCATCTCAACTGTTTCAAGGAACCAAGATTTCTCAGGAGCCATAATCCTCTTGCTACATCAAGGCCTGAGGTCTCATCTGAAGATCTGAATAAATTTCAGACAAATGAAGGGACTATTGCAGATTCAATTCATTCATATCATAACTCGAGTGAATCTCAGGAAAATGCTCTTGTAGGAATTCCTGTAGCAGATGATTCGGTTCCTCTACCTGGTCAGCACACAGAGTTTTCAGCTGAGATACCACAGGCCTTGAAATATAATAATTATGGTAACCCTGGCTATGATCCTGGTCATGAGACTAACCCTCTTCTGGGATTGCATGGTGAGGCAAAAGCAAATTTTGCCTATGTTCAGGAAAGTTTCAGAATTGATCCAAATGAAAGGGAATTGCTTAATCAGGGGTTTTCTCTCTTTGATTCAAAGAGTCAAGAATCAGAGTTTAAAGGGTGGAGACGCTGGGATAATTCAGTGTCCGGAGACACTGATTTGTTCTTTACAAATAACGCAACTTTAAAGGGTTTAATGCAAAATCCACCGGTAGACCGTTCTATGCCTCTGATATCGCAGTATGGTTTGAAAGATAATCGTCCTGTTGAGCAGAAACCATACGCTGAGTTTGTTACGCGGAGACGATATCTAAACTTTAAGAAGTCCAATTTGCCAAGAAAGAACTCAGATGATCATTTAAAATTGGGTTCGGTGATACATTCTGATGAGAAGAGTCTGGCTAATGAAAAGCAACTTGTTCCTGCAAAAAGCAATAGCAGTTCACCGAAATGCATTTTGCCTGGAAGTGGTTTAGATTTGGAAGCATTTGAAGGCCTAAAATTAGACAAGAAAGTCATAAATAATGACAAGTTGTCTTGTGGAATTCCTGTTAGTCTTCCCAGCTGCACTTCTTCCTTGCAATTCTTTAGAAGCCATGAACATCAAGGTGCACTGGCAATGGAACTGGATTCATCTGTCTTCGGGTCTCAGCTAGCAGAGGATTGTTCCCCGGCATCTGATTCCACCATTGGTGAAGATTTCAATCAGAATAGCCCCAGAAAGAAAAGGCAAGCGAGATTGCGTAAGTTCGATGCGGCTGAGACCGGAGGCTGCAAGGGTTGCAAATGCAAGAAATCAAAATGTTTGAAGTTATATTGCGAGTGCTTTGCTAGAGGTGAATACTGCAAAGACGACTGCTCCTGTCAGAATTGCTACAACAAACATATTCATCAAGACATCATTCTTCAAACTCGCAAGCAGATTGAGTCTCGCAACCCTCTTGCTTTTGCTCCTAAAATAGTCACAAGCTCACCTGAAATTGGGATTGATCCAAATAAAACTCCAGCATCAGCACGACACAAGAGAGGATGCAACTGCAAGAAATCAGTCTGCCTAAAGAAATACTGTGAATGCTTTCAGGCTGGTGTTGGATGTTCGGAAAGCTGTAGATGTGAAGGGTGCAAGAACACATTTGGTAGAAAGGATGGTTCTAATTCTATGGGAGTAGAAGCTGAGCCAGAAGAAGAAACAGAGGAGCGTGAAAAAGCAGATGCCGGGCAGAAGCTTGGGAAACCAAACACTCTCTTGTCTCAGCAACCTAAGCATTTTCAAGCTGTTTTGGAGGAGGAAATGCCAGATGCTGTCGGCCTAAGAGCAAGCGATAGGTCTCCGACGACATGCATCAAAACTTCTTCTCCAAATGGGAAGAGGATCTCCTCTCCTAGCTGTGACTTGATACCATCATCTCGAGGTGGCAGAAAGCTGATATTACAATCCATTCCTTCTTTTCCTTTTCTTACTGATCATGATAATCCCTAG 1971 0.4272 MDTPKTNPSISPFEDEPVFIFMNGLSPIKPMKSAQISQTFSSGSFPSPPRVFTSPHLNCFKEPRFLRSHNPLATSRPEVSSEDLNKFQTNEGTIADSIHSYHNSSESQENALVGIPVADDSVPLPGQHTEFSAEIPQALKYNNYGNPGYDPGHETNPLLGLHGEAKANFAYVQESFRIDPNERELLNQGFSLFDSKSQESEFKGWRRWDNSVSGDTDLFFTNNATLKGLMQNPPVDRSMPLISQYGLKDNRPVEQKPYAEFVTRRRYLNFKKSNLPRKNSDDHLKLGSVIHSDEKSLANEKQLVPAKSNSSSPKCILPGSGLDLEAFEGLKLDKKVINNDKLSCGIPVSLPSCTSSLQFFRSHEHQGALAMELDSSVFGSQLAEDCSPASDSTIGEDFNQNSPRKKRQARLRKFDAAETGGCKGCKCKKSKCLKLYCECFARGEYCKDDCSCQNCYNKHIHQDIILQTRKQIESRNPLAFAPKIVTSSPEIGIDPNKTPASARHKRGCNCKKSVCLKKYCECFQAGVGCSESCRCEGCKNTFGRKDGSNSMGVEAEPEEETEEREKADAGQKLGKPNTLLSQQPKHFQAVLEEEMPDAVGLRASDRSPTTCIKTSSPNGKRISSPSCDLIPSSRGGRKLILQSIPSFPFLTDHDNP 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211528g00026 656 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 423 458 IPR005172 -
Stsc211528g00026 656 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 506 541 IPR005172 -
Stsc211528g00026 656 ProSiteProfiles CRC domain profile. 421 543 IPR005172 -
Stsc211528g00026 656 MobiDBLite consensus disorder prediction 546 581 - -
Stsc211528g00026 656 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 581 652 IPR044522 GO:0003700
Stsc211528g00026 656 MobiDBLite consensus disorder prediction 388 407 - -
Stsc211528g00026 656 MobiDBLite consensus disorder prediction 600 627 - -
Stsc211528g00026 656 MobiDBLite consensus disorder prediction 607 627 - -
Stsc211528g00026 656 SMART CXC_2 503 544 IPR033467 -
Stsc211528g00026 656 SMART CXC_2 420 461 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211528g00026 Stsc-Chr211528 129611 132822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211528g00026 1 650 CPP Transcription Factor Family AT3G22780 32.267 1.62e-87 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc211528g00026 TCR 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211528g00026 - - aip:107628213 595.504