Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211528g00010 ATGTTCAGGTATGCTTTGCTGGGAGCTGCATCTTTTCTTGGTGGTTCAATGCGGATGACAGTGTCTCTTTGTGTCATTATGGTTGAAATAACGAATAACCTGAAACTTTTACCCCTTATTATGCTTGTTCTTCTTATGTCAAAGGCTGTTGGTGATGTCTTTAATGAGGGCCTATATGAAGAGCAGGCAAGATTAAGGGGCATTCCTTTACTGGAATCAAGGCCTAAATATGAGATGCGGAACATGACAGCAAAGGAGGCCTGTGGAAGTGGAAGGGTTATCTCGTTACCTCGGGTAGTTAAGGTTTCAGATGTAGTTTCTATTCTACAGAGCAACAAACACAATGGTTTTCCAGTGATTGATCACACAAGAAGTGGAGAATCGCTTGTTATTGGATTAGTGCTTCGGAGTCATTTGTTGGTAATCCTTCAGTCGAAGGTTGATTTCCAGCATAGCCCTTTACCCTCTGATCCCAGAGGTGGGGACAGGTCAATAAGGCACGATTCTCATGAATTTGCTAAGCCTGTTTCTAGTAAGGGGAGATCCATCGATGATATACATCTAAGTTCGGATGACTTGGAAATGTACATAGATCTTGCTCCATTTTTGAATCCCTCACCATACATTGTCCCTGAAGATATGTCTTTGGCAAAAGTGTACAATCTTTTCCGCCAACTTGGTTTGAGGCATTTATTTGTTGTTCCTCGTCCATCTCGCGTGCTTGGTTTGATAACCAGAAAAGATTTGTTGATTGAGGACACGGAAAATGTGAATACATTAGAGCTTCAGTCAACTAGTGTAAGAAATCGGCATCATAATAAAAGACTGATGACAAGGAACTCAGATGTGGAGCGCCCTTTGCTCAATGGTCTTCTCGTTGGTTCAGAATAA 891 0.4175 MFRYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLMSKAVGDVFNEGLYEEQARLRGIPLLESRPKYEMRNMTAKEACGSGRVISLPRVVKVSDVVSILQSNKHNGFPVIDHTRSGESLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRGGDRSIRHDSHEFAKPVSSKGRSIDDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLAKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDTENVNTLELQSTSVRNRHHNKRLMTRNSDVERPLLNGLLVGSE 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211528g00010 296 FunFam Chloride channel protein 195 286 - -
Stsc211528g00010 296 Pfam CBS domain 94 143 IPR000644 -
Stsc211528g00010 296 Pfam CBS domain 204 250 IPR000644 -
Stsc211528g00010 296 SMART cbs_1 206 254 IPR000644 -
Stsc211528g00010 296 SMART cbs_1 92 144 IPR000644 -
Stsc211528g00010 296 ProSiteProfiles CBS domain profile. 82 149 IPR000644 -
Stsc211528g00010 296 Gene3D - 91 257 IPR046342 -
Stsc211528g00010 296 Pfam Voltage gated chloride channel 4 51 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc211528g00010 296 Gene3D Clc chloride channel 2 72 - -
Stsc211528g00010 296 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 256 - -
Stsc211528g00010 296 MobiDBLite consensus disorder prediction 160 178 - -
Stsc211528g00010 296 SUPERFAMILY CBS-domain pair 76 250 IPR046342 -
Stsc211528g00010 296 SUPERFAMILY Clc chloride channel 3 73 IPR014743 -
Stsc211528g00010 296 ProSiteProfiles CBS domain profile. 203 260 IPR000644 -
Stsc211528g00010 296 MobiDBLite consensus disorder prediction 152 178 - -
Stsc211528g00010 296 CDD CBS_pair_voltage-gated_CLC_euk_bac 93 250 - -
Stsc211528g00010 296 PRINTS Chloride channel signature 20 39 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc211528g00010 296 PRINTS Chloride channel signature 58 72 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc211528g00010 296 PRINTS Chloride channel signature 2 18 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211528g00010 Stsc-Chr211528 51775 54408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211528g00010 4 269 Ion Channels AT5G26240 82.707 2.63e-146 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211528g00010 K05016 - gmx:100811908 507.679