Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211528g00009 ATGTTTTACACTTTAGCAGTGTTGACATTTGGTACTGCGGTGCCAGCTGGTCAATTTGTCCCTGGTATAATGATAGGATCAACTTATGGACGTCTTGTTGGCATGTTCGTTGTAAAATATTACAAAAAGCCCAACATTGAAGAGGGAACGTATGCTTTGCTGGGAGCTGCATCTTTTCTTGGTGGTTCAATGCGGATGACAGTGTCTCTTTGTGTCATTATGGTTGAAATAACGAATAACCTGAAACTTTTACCCCTTATTATGCTTGTTCTTCTTATGTCAAAGGCTGTTGGTGATGTCTTTAATGAGGGCCTATATGAAGAGCAGGCAAGATTAAGGGGCATTCCTTTACTGGAATCAAGGCCTAAATATGAGATGCGGAACATGACAGCAAAGGAGGCCTGTGGAAGTGGAAGGGTTATCTCGTTACCTCGGGTAGTTAAGGTTTCAGATGTAGTTTCTATTCTACAGAGCAACAAACACAATGGTTTTCCAGTGATTGATCACACAAGAAGTGGAGAATCGCTTGTTATTGGATTAGTGCTTCGGAGTCATTTGTTGGTAATCCTTCAGTCGAAGGTTGATTTCCAGCATAGCCCTTTACCCTCTGATCCCAGAGGTGGGGACAGGTCAATAAGGCACGATTCTCATGAATTTGCTAAGCCTGTTTCTAGTAAGGGGAGATCCATCGATGATATACATCTAAGTTCGGATGACTTGGAAATGTACATAGATCTTGCTCCATTTTTGAATCCCTCACCATACATTGTCCCTGAAGATATGTCTTTGGCAAAAGTGTACAATCTTTTCCGCCAACTTGGTTTGAGGCATTTATTTGTTGTTCCTCGTCCATCTCGCGTGCTTGGTTTGATAACCAGAAAAGATTTGTTGATTGAGGACACGGAAAATGTGAATACATTAGAGCTTCAGTCAACTAGTGTAAGAAATCGGCATCATAATAAAAGACTGATGACAAGGAACTCAGATGTGGAGCGCCCTTTGCTCAATGGTCTTCTCGTTGGTTCAGAATAA 1032 0.4157 MFYTLAVLTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLMSKAVGDVFNEGLYEEQARLRGIPLLESRPKYEMRNMTAKEACGSGRVISLPRVVKVSDVVSILQSNKHNGFPVIDHTRSGESLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRGGDRSIRHDSHEFAKPVSSKGRSIDDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLAKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDTENVNTLELQSTSVRNRHHNKRLMTRNSDVERPLLNGLLVGSE 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211528g00009 343 Gene3D Clc chloride channel 1 119 - -
Stsc211528g00009 343 ProSiteProfiles CBS domain profile. 129 196 IPR000644 -
Stsc211528g00009 343 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 302 - -
Stsc211528g00009 343 Pfam Voltage gated chloride channel 4 98 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc211528g00009 343 ProSiteProfiles CBS domain profile. 250 307 IPR000644 -
Stsc211528g00009 343 SMART cbs_1 139 191 IPR000644 -
Stsc211528g00009 343 SMART cbs_1 253 301 IPR000644 -
Stsc211528g00009 343 SUPERFAMILY CBS-domain pair 123 297 IPR046342 -
Stsc211528g00009 343 CDD CBS_pair_voltage-gated_CLC_euk_bac 140 297 - -
Stsc211528g00009 343 PRINTS Chloride channel signature 49 65 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc211528g00009 343 PRINTS Chloride channel signature 67 86 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc211528g00009 343 PRINTS Chloride channel signature 14 34 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc211528g00009 343 PRINTS Chloride channel signature 105 119 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc211528g00009 343 MobiDBLite consensus disorder prediction 207 225 - -
Stsc211528g00009 343 Gene3D - 138 304 IPR046342 -
Stsc211528g00009 343 FunFam Chloride channel protein 242 333 - -
Stsc211528g00009 343 MobiDBLite consensus disorder prediction 199 225 - -
Stsc211528g00009 343 Pfam CBS domain 141 190 IPR000644 -
Stsc211528g00009 343 Pfam CBS domain 251 297 IPR000644 -
Stsc211528g00009 343 SUPERFAMILY Clc chloride channel 4 120 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211528g00009 Stsc-Chr211528 51314 54408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211528g00009 1 316 Ion Channels AT5G26240 84.177 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211528g00009 K05016 - gmx:100811908 599.742