Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211528g00007 ATGTATGGGAATTATGTAAATTTCTTTTGTAGCAATGACAAGGAGTATAATGATCTTGCGACTATTTTCTTCAATACACAGGATGATGCCATCAGGAACTTGTTCAGTGCAAAAACAATGCATGAGTACAGTTCCCAAAGTCTGTTAACCTTTTTGGTTATGTTTTACACTTTAGCAGTGTTGACATTTGGTACTGCGGTGCCAGCTGGTCAATTTGTCCCTGGTATAATGATAGGATCAACTTATGGACGTCTTGTTGGCATGTTCGTTGTAAAATATTACAAAAAGCCCAACATTGAAGAGGGAACGTATGCTTTGCTGGGAGCTGCATCTTTTCTTGGTGGTTCAATGCGGATGACAGTGTCTCTTTGTGTCATTATGGTTGAAATAACGAATAACCTGAAACTTTTACCCCTTATTATGCTTGTTCTTCTTATGTCAAAGGCTGTTGGTGATGTCTTTAATGAGGGCCTATATGAAGAGCAGGCAAGATTAAGGGGCATTCCTTTACTGGAATCAAGGCCTAAATATGAGATGCGGAACATGACAGCAAAGGAGGCCTGTGGAAGTGGAAGGGTTATCTCGTTACCTCGGGTAGTTAAGGTTTCAGATGTAGTTTCTATTCTACAGAGCAACAAACACAATGGTTTTCCAGTGATTGATCACACAAGAAGTGGAGAATCGCTTGTTATTGGATTAGTGCTTCGGAGTCATTTGTTGGTAATCCTTCAGTCGAAGGTTGATTTCCAGCATAGCCCTTTACCCTCTGATCCCAGAGGTGGGGACAGGTCAATAAGGCACGATTCTCATGAATTTGCTAAGCCTGTTTCTAGTAAGGGGAGATCCATCGATGATATACATCTAAGTTCGGATGACTTGGAAATGTACATAGATCTTGCTCCATTTTTGAATCCCTCACCATACATTGTCCCTGAAGATATGTCTTTGGCAAAAGTGTACAATCTTTTCCGCCAACTTGGTTTGAGGCATTTATTTGTTGTTCCTCGTCCATCTCGCGTGCTTGGTTTGATAACCAGAAAAGATTTGTTGATTGAGGACACGGAAAATGTGAATACATTAGAGCTTCAGTCAACTAGTGTAAGGTCTCTGATGCTTTACTCATTACTCATTTGA 1134 0.4048 MYGNYVNFFCSNDKEYNDLATIFFNTQDDAIRNLFSAKTMHEYSSQSLLTFLVMFYTLAVLTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLMSKAVGDVFNEGLYEEQARLRGIPLLESRPKYEMRNMTAKEACGSGRVISLPRVVKVSDVVSILQSNKHNGFPVIDHTRSGESLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRGGDRSIRHDSHEFAKPVSSKGRSIDDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLAKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDTENVNTLELQSTSVRSLMLYSLLI 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211528g00007 377 ProSiteProfiles CBS domain profile. 303 360 IPR000644 -
Stsc211528g00007 377 Gene3D - 191 356 IPR046342 -
Stsc211528g00007 377 PRINTS Chloride channel signature 120 139 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc211528g00007 377 PRINTS Chloride channel signature 158 172 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc211528g00007 377 PRINTS Chloride channel signature 102 118 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc211528g00007 377 PRINTS Chloride channel signature 67 87 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc211528g00007 377 MobiDBLite consensus disorder prediction 260 278 - -
Stsc211528g00007 377 CDD CBS_pair_voltage-gated_CLC_euk_bac 193 350 - -
Stsc211528g00007 377 MobiDBLite consensus disorder prediction 252 278 - -
Stsc211528g00007 377 SUPERFAMILY Clc chloride channel 24 173 IPR014743 -
Stsc211528g00007 377 Gene3D Clc chloride channel 7 172 - -
Stsc211528g00007 377 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 2 355 - -
Stsc211528g00007 377 ProSiteProfiles CBS domain profile. 182 249 IPR000644 -
Stsc211528g00007 377 Pfam Voltage gated chloride channel 23 151 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc211528g00007 377 SUPERFAMILY CBS-domain pair 176 350 IPR046342 -
Stsc211528g00007 377 FunFam Chloride channel protein 263 352 - -
Stsc211528g00007 377 Pfam CBS domain 194 243 IPR000644 -
Stsc211528g00007 377 Pfam CBS domain 304 350 IPR000644 -
Stsc211528g00007 377 SMART cbs_1 306 354 IPR000644 -
Stsc211528g00007 377 SMART cbs_1 192 244 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211528g00007 Stsc-Chr211528 49742 54410 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211528g00007 1 370 Ion Channels AT5G26240 84.595 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211528g00007 K05016 - gmx:100811908 667.537