Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211527g00013 ATGGATGTGAATGTGGAGAGGGCAGAGGACGTTCTTGCTCATCAGAGATTACTCAAGCTTGCTGAGGACCCTGCTAATCGACCAGTATTTCAAGTTCGCTTAGTACAGGTTTATCCTTTTGGTGGTGCCAATAATGTTGATTTGATGCACTCAGATCCTTCTGAGAAAGAAGATGCACAAAGCTCTCTTAACTATTCATTTAAGCAGGGAGTTCATCCACCGCCAACTTTTGGTTCATCCTCTAATCTTGAAGCTCTTGCACTTCAAAACGTTGAAGATGGGGCCAGTCCTATGGGTGTGATGCCATATATTCAGCGGCCTATGCATGAGATCACTTTTTCAACAGTTGACAAGCCTAAACTGCTTAGTCAGTTAACCTTAATTCTTGGTGAGCTTGGACTGAACATTCAGGAAGCTCATGCTTTTTCAACCTCAGATGGGTTTTCTTTGGATGTCTTTGTTGTTGAGGGATGGCCTAATGAGGAAACTGAGGAGCTTAAAGGTGTTCTGGAAAGGGAAATTTTGAAGGTTAAGGGCATACTTTCTGGTGCCAGTGAACATTATCAGGCAAGGGTGGAACCATCCCCTCATTGCATAGAAATACCATCTGATGGAGCTGATGTATGGGAAATTGATACCAACCAGCTCAAATACGAAAACAAAGTTGGCTCTGGATCATTTGGTGACTTGTACAGAGGTACATATTGCAGTCAGGATGTGGCTATCAAAGTTCTTAAGCCTGAACGCATAAGTACAGATATGTTGAGAGAGTTTGCACAGGAAGTTTATATCATGAGGAAAATTCGACACAAAAATGTTGTTCAGTTCATCGGTGCATGTACTCGGCCACCAAATCTTTGTATAGTTACCGAGTTTATGTCTAGAGGAAGCTTATATGACTTTCTGCACAAACAAAGGGGTGTATTTAAGCTCCCATCTTTACTAAAAGTAGCGATTGATGTTTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATTCACAGAGATCTCAAGACTGCCAATCTTCTGATGGATGAAAATGAAGTGGTCAAGGTTGCTGATTTTGGGGTTGCAAGAGTGCAAACTCAATCTGGAGTGATGACTGCTGAAACTGGAACATACCGCTGGATGGCTCCTGAGGTCATTGAACACAAACCATATGACCAGAAGGCTGATGTTTTTAGTTTTGGAATAGCTCTTTGGGAGCTTTTAACCGGAGAACTACCATACTCTTACTTGACCCCATTGCAAGCAGCAGTTGGCGTGGTGCAGAAGGGCCTTCGGCCTACAATCCCCAAAAATACACATCCAAGACTATCTGAACTGCTCCAGCGGTGCTGGCAGCAAGATCCATTGCAGAGACCGGATTTCTCCGAAATTATAGAAATTCTTCAGCAGATAGCAAAAGAGGTCAATGATGATAAAGATCGACACAAAGAAAAGTCATCGCATTCCCACGGCTTTCTCTCATCACTACGACGTGCCCATCACTGA 1497 0.4282 MDVNVERAEDVLAHQRLLKLAEDPANRPVFQVRLVQVYPFGGANNVDLMHSDPSEKEDAQSSLNYSFKQGVHPPPTFGSSSNLEALALQNVEDGASPMGVMPYIQRPMHEITFSTVDKPKLLSQLTLILGELGLNIQEAHAFSTSDGFSLDVFVVEGWPNEETEELKGVLEREILKVKGILSGASEHYQARVEPSPHCIEIPSDGADVWEIDTNQLKYENKVGSGSFGDLYRGTYCSQDVAIKVLKPERISTDMLREFAQEVYIMRKIRHKNVVQFIGACTRPPNLCIVTEFMSRGSLYDFLHKQRGVFKLPSLLKVAIDVSKGMNYLHQNNIIHRDLKTANLLMDENEVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDQKADVFSFGIALWELLTGELPYSYLTPLQAAVGVVQKGLRPTIPKNTHPRLSELLQRCWQQDPLQRPDFSEIIEILQQIAKEVNDDKDRHKEKSSHSHGFLSSLRRAHH 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211527g00013 498 Gene3D Transferase(Phosphotransferase) domain 1 295 494 - -
Stsc211527g00013 498 ProSitePatterns Protein kinases ATP-binding region signature. 222 243 IPR017441 GO:0005524
Stsc211527g00013 498 CDD ACT_TyrKc 108 175 - -
Stsc211527g00013 498 CDD STKc_MAP3K-like 222 465 - -
Stsc211527g00013 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 333 345 IPR008271 GO:0004672|GO:0006468
Stsc211527g00013 498 ProSiteProfiles ACT domain profile. 110 182 IPR002912 -
Stsc211527g00013 498 SUPERFAMILY Protein kinase-like (PK-like) 194 465 IPR011009 -
Stsc211527g00013 498 FunFam serine/threonine-protein kinase HT1 295 487 - -
Stsc211527g00013 498 Gene3D Phosphorylase Kinase; domain 1 206 294 - -
Stsc211527g00013 498 Pfam Protein tyrosine and serine/threonine kinase 216 465 IPR001245 GO:0004672|GO:0006468
Stsc211527g00013 498 FunFam Serine/threonine-protein kinase isoform 1 206 294 - -
Stsc211527g00013 498 Coils Coil 462 482 - -
Stsc211527g00013 498 MobiDBLite consensus disorder prediction 474 498 - -
Stsc211527g00013 498 ProSiteProfiles Protein kinase domain profile. 216 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211527g00013 498 PRINTS Tyrosine kinase catalytic domain signature 392 414 IPR001245 GO:0004672|GO:0006468
Stsc211527g00013 498 PRINTS Tyrosine kinase catalytic domain signature 290 303 IPR001245 GO:0004672|GO:0006468
Stsc211527g00013 498 PRINTS Tyrosine kinase catalytic domain signature 327 345 IPR001245 GO:0004672|GO:0006468
Stsc211527g00013 498 PRINTS Tyrosine kinase catalytic domain signature 373 383 IPR001245 GO:0004672|GO:0006468
Stsc211527g00013 498 PRINTS Tyrosine kinase catalytic domain signature 436 458 IPR001245 GO:0004672|GO:0006468
Stsc211527g00013 498 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 118 472 - -
Stsc211527g00013 498 SMART serkin_6 216 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211527g00013 498 MobiDBLite consensus disorder prediction 474 488 - -
Stsc211527g00013 498 SUPERFAMILY ACT-like 108 172 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211527g00013 Stsc-Chr211527 68492 76054 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211527g00013 1 497 MAP Kinase Kinase Kinase AT4G35780 69.960 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc211527g00013 PK_Tyr_Ser-Thr 2.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211527g00013 - - gmx:100803377 896.345