Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211527g00012 ATGGATGTGAATGTGGAGAGGGCAGAGGACGTTCTTGCTCATCAGAGATTACTCAAGCTTGCTGAGGACCCTGCTAATCGACCAGTATTTCAAGTTCGCTTAGTACAGGTTTATCCTTTTGGTGGTGCCAATAATGTTGATTTGATGCACTCAGATCCTTCTGAGAAAGAAGATGCACAAAGCTCTCTTAACTATTCATTTAAGCAGGGAGTTCATCCACCGCCAACTTTTGGTTCATCCTCTAATCTTGAAGCTCTTGCACTTCAAAACGTTGAAGATGGGGCCAGTCCTATGGGTGTGATGCCATATATTCAGCGGCCTATGCATGAGATCACTTTTTCAACAGTTGACAAGCCTAAACTGCTTAGTCAGTTAACCTTAATTCTTGGTGAGCTTGGACTGAACATTCAGGAAGCTCATGCTTTTTCAACCTCAGATGGGTTTTCTTTGGATGTCTTTGTTGTTGAGGGATGGCCTAATGAGGAAACTGAGGAGCTTAAAGGTGTTCTGGAAAGGGAAATTTTGAAGGTTAAGGGCATACTTTCTGGTGCCAGTGAACATTATCAGGCAAGGGTGGAACCATCCCCTCATTGCATAGAAATACCATCTGATGGAGCTGATGTATGGGAAATTGATACCAACCAGCTCAAATACGAAAACAAAGTTGGCTCTGGATCATTTGGTGACTTGTACAGAGGTACATATTGCAGTCAGGATGTGGCTATCAAAGTTCTTAAGCCTGAACGCATAAGTACAGATATGTTGAGAGAGTTTGCACAGGAAGTTTATATCATGAGGAAAATTCGACACAAAAATGTTGTTCAGTTCATCGGTGCATGTACTCGGCCACCAAATCTTTGTATAGTTACCGAGTTTATGTCTAGAGGAAGCTTATATGACTTTCTGCACAAACAAAGGGGTGTATTTAAGCTCCCATCTTTACTAAAAGTAGCGATTGATGTTTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATTCACAGAGATCTCAAGACTGCCAATCTTCTGATGGATGAAAATGAAGTGGTCAAGGTTGCTGATTTTGGGGTTGCAAGAGTGCAAACTCAATCTGGAGTGATGACTGCTGAAACTGGAACATACCGCTGGATGGCTCCTGAGGTCATTGAACACAAACCATATGACCAGAAGGCTGATGTTTTTAGTTTTGGAATAGCTCTTTGGGAGCTTTTAACCGGAGAACTACCATACTCTTACTTGACCCCATTGCAAGCAGCAGTTGGCGTGGTGCAGAAGGTTTTATTCTGTTCTCTTTGGCAATTATTTTGTCATAAACTTTTTTTCCCCCTTTTTCTCTTATTTATGCAAGATAATTCTTTTGGTAGACGTATGCATGATAATTCTGTGTGGCTTAAATTGCTATTAGGGCCTTCGGCCTACAATCCCCAAAAATACACATCCAAGACTATCTGA 1455 0.4131 MDVNVERAEDVLAHQRLLKLAEDPANRPVFQVRLVQVYPFGGANNVDLMHSDPSEKEDAQSSLNYSFKQGVHPPPTFGSSSNLEALALQNVEDGASPMGVMPYIQRPMHEITFSTVDKPKLLSQLTLILGELGLNIQEAHAFSTSDGFSLDVFVVEGWPNEETEELKGVLEREILKVKGILSGASEHYQARVEPSPHCIEIPSDGADVWEIDTNQLKYENKVGSGSFGDLYRGTYCSQDVAIKVLKPERISTDMLREFAQEVYIMRKIRHKNVVQFIGACTRPPNLCIVTEFMSRGSLYDFLHKQRGVFKLPSLLKVAIDVSKGMNYLHQNNIIHRDLKTANLLMDENEVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDQKADVFSFGIALWELLTGELPYSYLTPLQAAVGVVQKVLFCSLWQLFCHKLFFPLFLLFMQDNSFGRRMHDNSVWLKLLLGPSAYNPQKYTSKTI 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211527g00012 484 SMART serkin_6 216 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211527g00012 484 SUPERFAMILY ACT-like 108 172 IPR045865 -
Stsc211527g00012 484 ProSitePatterns Protein kinases ATP-binding region signature. 222 243 IPR017441 GO:0005524
Stsc211527g00012 484 Pfam Protein tyrosine and serine/threonine kinase 216 418 IPR001245 GO:0004672|GO:0006468
Stsc211527g00012 484 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 130 426 - -
Stsc211527g00012 484 ProSiteProfiles Protein kinase domain profile. 216 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211527g00012 484 Gene3D Phosphorylase Kinase; domain 1 206 294 - -
Stsc211527g00012 484 CDD ACT_TyrKc 108 175 - -
Stsc211527g00012 484 SUPERFAMILY Protein kinase-like (PK-like) 194 448 IPR011009 -
Stsc211527g00012 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 333 345 IPR008271 GO:0004672|GO:0006468
Stsc211527g00012 484 Gene3D Transferase(Phosphotransferase) domain 1 295 446 - -
Stsc211527g00012 484 ProSiteProfiles ACT domain profile. 110 182 IPR002912 -
Stsc211527g00012 484 FunFam Serine/threonine-protein kinase isoform 1 206 294 - -
Stsc211527g00012 484 PRINTS Tyrosine kinase catalytic domain signature 373 383 IPR001245 GO:0004672|GO:0006468
Stsc211527g00012 484 PRINTS Tyrosine kinase catalytic domain signature 327 345 IPR001245 GO:0004672|GO:0006468
Stsc211527g00012 484 PRINTS Tyrosine kinase catalytic domain signature 392 414 IPR001245 GO:0004672|GO:0006468
Stsc211527g00012 484 PRINTS Tyrosine kinase catalytic domain signature 290 303 IPR001245 GO:0004672|GO:0006468
Stsc211527g00012 484 CDD STKc_MAP3K-like 222 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211527g00012 Stsc-Chr211527 68492 76054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211527g00012 1 428 MAP Kinase Kinase Kinase AT4G35780 71.854 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc211527g00012 PK_Tyr_Ser-Thr 1.6e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211527g00012 - - gmx:100803377 778.089