Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211527g00011 ATGGTGATTGAGAACGACATTGAGAGCTGCGGGAGCAGGGCGGTGCAGTCCTCGTCGTCTCACGCGCATCCACGTCATCACCGCCAGAAGCTAGAGGTCTACAATGAGGTCCTCCGCCGTATTCAGGACTCAAATTTCGACGAAGCCAACGTCCCTGGCTTCGACGATCACCTCTGGCTCCACTTCAATCGTCTTCCCGCTAGGTATGCTATGGATGTGAATGTGGAGAGGGCAGAGGACGTTCTTGCTCATCAGAGATTACTCAAGCTTGCTGAGGACCCTGCTAATCGACCAGTATTTCAAGTTCGCTTAGTACAGGTTTATCCTTTTGGTGGTGCCAATAATGTTGATTTGATGCACTCAGATCCTTCTGAGAAAGAAGATGCACAAAGCTCTCTTAACTATTCATTTAAGCAGGGAGTTCATCCACCGCCAACTTTTGGTTCATCCTCTAATCTTGAAGCTCTTGCACTTCAAAACGTTGAAGATGGGGCCAGTCCTATGGGTGTGATGCCATATATTCAGCGGCCTATGCATGAGATCACTTTTTCAACAGTTGACAAGCCTAAACTGCTTAGTCAGTTAACCTTAATTCTTGGTGAGCTTGGACTGAACATTCAGGAAGCTCATGCTTTTTCAACCTCAGATGGGTTTTCTTTGGATGTCTTTGTTGTTGAGGGATGGCCTAATGAGGAAACTGAGGAGCTTAAAGGTGTTCTGGAAAGGGAAATTTTGAAGGTTAAGGGCATACTTTCTGGTGCCAGTGAACATTATCAGGCAAGGGTGGAACCATCCCCTCATTGCATAGAAATACCATCTGATGGAGCTGATGTATGGGAAATTGATACCAACCAGCTCAAATACGAAAACAAAGTTGGCTCTGGATCATTTGGTGACTTGTACAGAGGTACATATTGCAGTCAGGATGTGGCTATCAAAGTTCTTAAGCCTGAACGCATAAGTACAGATATGTTGAGAGAGTTTGCACAGGAAGTTTATATCATGAGGAAAATTCGACACAAAAATGTTGTTCAGTTCATCGGTGCATGTACTCGGCCACCAAATCTTTGTATAGTTACCGAGTTTATGTCTAGAGGAAGCTTATATGACTTTCTGCACAAACAAAGGGGTGTATTTAAGCTCCCATCTTTACTAAAAGTAGCGATTGATGTTTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATTCACAGAGATCTCAAGACTGCCAATCTTCTGATGGATGAAAATGAAGTGGTCAAGGTTGCTGATTTTGGGGTTGCAAGAGTGCAAACTCAATCTGGAGTGATGACTGCTGAAACTGGAACATACCGCTGGATGGCTCCTGAGGTCATTGAACACAAACCATATGACCAGAAGGCTGATGTTTTTAGTTTTGGAATAGCTCTTTGGGAGCTTTTAACCGGAGAACTACCATACTCTTACTTGACCCCATTGCAAGCAGCAGTTGGCGTGGTGCAGAAGGGCCTTCGGCCTACAATCCCCAAAAATACACATCCAAGACTATCTGAACTGCTCCAGCGGTGCTGGCAGCAAGATCCATTGCAGAGACCGGATTTCTCCGAAATTATAGAAATTCTTCAGCAGATAGCAAAAGAGGTCAATGATGATAAAGATCGACACAAAGAAAAGTCATCGCATTCCCACGGCTTTCTCTCATCACTACGACGTGCCCATCACTGA 1707 0.4446 MVIENDIESCGSRAVQSSSSHAHPRHHRQKLEVYNEVLRRIQDSNFDEANVPGFDDHLWLHFNRLPARYAMDVNVERAEDVLAHQRLLKLAEDPANRPVFQVRLVQVYPFGGANNVDLMHSDPSEKEDAQSSLNYSFKQGVHPPPTFGSSSNLEALALQNVEDGASPMGVMPYIQRPMHEITFSTVDKPKLLSQLTLILGELGLNIQEAHAFSTSDGFSLDVFVVEGWPNEETEELKGVLEREILKVKGILSGASEHYQARVEPSPHCIEIPSDGADVWEIDTNQLKYENKVGSGSFGDLYRGTYCSQDVAIKVLKPERISTDMLREFAQEVYIMRKIRHKNVVQFIGACTRPPNLCIVTEFMSRGSLYDFLHKQRGVFKLPSLLKVAIDVSKGMNYLHQNNIIHRDLKTANLLMDENEVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDQKADVFSFGIALWELLTGELPYSYLTPLQAAVGVVQKGLRPTIPKNTHPRLSELLQRCWQQDPLQRPDFSEIIEILQQIAKEVNDDKDRHKEKSSHSHGFLSSLRRAHH 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211527g00011 568 Coils Coil 532 552 - -
Stsc211527g00011 568 PRINTS Tyrosine kinase catalytic domain signature 397 415 IPR001245 GO:0004672|GO:0006468
Stsc211527g00011 568 PRINTS Tyrosine kinase catalytic domain signature 360 373 IPR001245 GO:0004672|GO:0006468
Stsc211527g00011 568 PRINTS Tyrosine kinase catalytic domain signature 462 484 IPR001245 GO:0004672|GO:0006468
Stsc211527g00011 568 PRINTS Tyrosine kinase catalytic domain signature 443 453 IPR001245 GO:0004672|GO:0006468
Stsc211527g00011 568 PRINTS Tyrosine kinase catalytic domain signature 506 528 IPR001245 GO:0004672|GO:0006468
Stsc211527g00011 568 CDD STKc_MAP3K-like 292 535 - -
Stsc211527g00011 568 ProSiteProfiles Protein kinase domain profile. 286 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211527g00011 568 ProSiteProfiles ACT domain profile. 180 252 IPR002912 -
Stsc211527g00011 568 MobiDBLite consensus disorder prediction 1 28 - -
Stsc211527g00011 568 CDD ACT_TyrKc 178 245 - -
Stsc211527g00011 568 ProSitePatterns Protein kinases ATP-binding region signature. 292 313 IPR017441 GO:0005524
Stsc211527g00011 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Stsc211527g00011 568 FunFam serine/threonine-protein kinase HT1 365 557 - -
Stsc211527g00011 568 MobiDBLite consensus disorder prediction 544 558 - -
Stsc211527g00011 568 MobiDBLite consensus disorder prediction 544 568 - -
Stsc211527g00011 568 Gene3D Transferase(Phosphotransferase) domain 1 365 564 - -
Stsc211527g00011 568 Gene3D Phosphorylase Kinase; domain 1 276 364 - -
Stsc211527g00011 568 SMART serkin_6 286 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211527g00011 568 SUPERFAMILY ACT-like 178 242 IPR045865 -
Stsc211527g00011 568 SUPERFAMILY Protein kinase-like (PK-like) 264 535 IPR011009 -
Stsc211527g00011 568 Pfam Protein tyrosine and serine/threonine kinase 286 535 IPR001245 GO:0004672|GO:0006468
Stsc211527g00011 568 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 146 542 - -
Stsc211527g00011 568 FunFam Serine/threonine-protein kinase isoform 1 276 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211527g00011 Stsc-Chr211527 67819 76054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211527g00011 2 567 MAP Kinase Kinase Kinase AT4G35780 69.913 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc211527g00011 PK_Tyr_Ser-Thr 3.1e-75 CL0016