Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211527g00008 ATGGCGGATTCTCCTGTGAGAAGGAATTCAAGGTCCCCTTCCCCGTGGAGAGCACAATCGAGATCACGATCCAGGTCCAGGTCTAGGCCTAGGTCTAGGTCTAGATCACGATCTATCCCAAGACAAAGGCCGAGATCTCGTTCAAGAAGCCGTGGCAGATCAAGATCAAGAAGTCATGAGAGGGGTGGAGAGACTCAAAATCCAGGCAATACACTGTATGTGACAGGTCTATCGTCAAGGGTCACTGAGAGAGACTTAGAGGAGCATTTCTCTAAGGAGGGAAAAGTTGCCTCATGTTTTCTTGTGGTGGAGCCTAGAACACGGATCTCTCGTGGTTTTGCTTTTATCACAATGGATTCTGTTGAGGATGCTAACCGATGCATCAAATATCTAAATCAATCAGTTTTAGAGGGTCGCTATATCACAGTTGAGAGGTCACGAAGAAAGAGGCCAAGGACTCCCACTCCTGGACACTATCTTGGGCTAAAAAGTACAAGAGACTATGGGCACCGTGGTGACCGTGGTGGTGATCGTGGGAGGTATCGAGGTGGATCCGGGCGTGATGATTATCAATATCGACGGTCTCCAAGGCGCTCACCATATCGAGGTGGCAGGGACTATTCACCAAGGCGCTCTCCTTACGGTGGAGGTGGAGGTGGAAGATCTAGGAAGGAAAGGTCTAGGTCACCCCCTTATTCCCCATACGGTAGTCCAGACAGGAGATATGCTCGGGGATCTAGGTGA 744 0.5 MADSPVRRNSRSPSPWRAQSRSRSRSRSRPRSRSRSRSIPRQRPRSRSRSRGRSRSRSHERGGETQNPGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDSVEDANRCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDYGHRGDRGGDRGRYRGGSGRDDYQYRRSPRRSPYRGGRDYSPRRSPYGGGGGGRSRKERSRSPPYSPYGSPDRRYARGSR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211527g00008 247 MobiDBLite consensus disorder prediction 145 247 - -
Stsc211527g00008 247 MobiDBLite consensus disorder prediction 22 56 - -
Stsc211527g00008 247 Gene3D - 8 155 IPR012677 -
Stsc211527g00008 247 SMART rrm1_1 71 144 IPR000504 GO:0003723
Stsc211527g00008 247 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 58 240 - -
Stsc211527g00008 247 MobiDBLite consensus disorder prediction 1 73 - -
Stsc211527g00008 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 148 IPR000504 GO:0003723
Stsc211527g00008 247 MobiDBLite consensus disorder prediction 1 21 - -
Stsc211527g00008 247 MobiDBLite consensus disorder prediction 164 205 - -
Stsc211527g00008 247 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 154 - -
Stsc211527g00008 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 141 IPR000504 GO:0003723
Stsc211527g00008 247 CDD RRM_SF 72 144 - -
Stsc211527g00008 247 SUPERFAMILY RNA-binding domain, RBD 24 146 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211527g00008 Stsc-Chr211527 36498 39203 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211527g00008 69 152 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 5.04e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211527g00008 K12897 - cpap:110822191 237.269