Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211527g00007 ATGGCGGATTCTCCTGTGAGAAGGAATTCAAGGTCCCCTTCCCCGTGGAGAGCACAATCGAGATCACGATCCAGGTCCAGGTCTAGGCCTAGGTCTAGGTCTAGATCACGATCTATCCCAAGACAAAGGCCGAGATCTCGTTCAAGAAGCCGTGGCAGATCAAGATCAAGAAGTCATGAGAGGGGTGGAGAGACTCAAAATCCAGGCAATACACTGTATGTGACAGGTCTATCGTCAAGGGTCACTGAGAGAGACTTAGAGGAGCATTTCTCTAAGGAGGGAAAAGTTGCCTCATGTTTTCTTGTGGTGGAGCCTAGAACACGGATCTCTCGTGGTTTTGCTTTTATCACAATGGATTCTGTTGAGGATGCTAACCGATGCATCAAATATCTAAATCAATCAGTTTTAGAGGGTCGCTATATCACAGTTGAGAGGAATACATTGCATCAGCTATGTTGGCAGCAATCAAAGATGATCAGTTCATCCATGTCAACTTTAGTGAAACAGTTTGATCAATGGCAAGCTTTAACAGCTAATCAAATGCTGAAATGCGTCTGA 558 0.4498 MADSPVRRNSRSPSPWRAQSRSRSRSRSRPRSRSRSRSIPRQRPRSRSRSRGRSRSRSHERGGETQNPGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDSVEDANRCIKYLNQSVLEGRYITVERNTLHQLCWQQSKMISSSMSTLVKQFDQWQALTANQMLKCV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211527g00007 185 MobiDBLite consensus disorder prediction 1 21 - -
Stsc211527g00007 185 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 58 146 - -
Stsc211527g00007 185 MobiDBLite consensus disorder prediction 22 56 - -
Stsc211527g00007 185 MobiDBLite consensus disorder prediction 1 74 - -
Stsc211527g00007 185 SMART rrm1_1 71 144 IPR000504 GO:0003723
Stsc211527g00007 185 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 153 - -
Stsc211527g00007 185 SUPERFAMILY RNA-binding domain, RBD 24 145 IPR035979 GO:0003676
Stsc211527g00007 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 141 IPR000504 GO:0003723
Stsc211527g00007 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 148 IPR000504 GO:0003723
Stsc211527g00007 185 Gene3D - 7 149 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211527g00007 Stsc-Chr211527 36498 39203 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211527g00007 67 144 Eukaryotic Initiation Factors Gene Family AT3G11400 37.179 7.44e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211527g00007 K12897 - cit:102618370 164.081