Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211527g00006 ATGGCGGAAACCGGTAACGGTAATGGCATCACGTACCTCCACGGCGACCTCGAACTCACAATCATTGAGGCTCGCCATTTACCTAACATGGACATCGTCTCCGAGCGATTACGCCGCTGCGTCACCGCCTGCGACACCATCAACTTCCACTCCGCCGAACCCGCCGCTGCTGACGGCACCAGCAACCCTCCCTCCTCCGCCCGCAGACACCGCGGTAAAATCATCACCAGCGACCCCTACGTCACTGTCACTGTCCCGCAGGCCACCGTAGCCCGCACGCGCGTGATTCGCAACGCTCAGAACCCGCGTTGGGACGAACGCTTTCACATCCCGCTCGCTCATCCTCTCGTCGACCTCGAGTTCCGCGTCAAGGACGACGACGTCTTCGGTGCCGAAACTATCGGCACCGTCAAGATTCCGGCAACCAGAATCGCCACCGGCGACGTCATTTCCGGCTGGTTCGATCTACTCAATTCCTCCGGCAAGCCACCAAAGGCGAACGCCGCACTCCGCCTCGAGATGAAATTCACGGCGGTGCAGGACAACCCGCTTTATCGGAGCGGCATCGCCGCAGATCCAGAACACCGTGGTGTGCGGCACACTTACTTTCCAGTGAGGAGAGGGAGCTCGGTGAGGCTGTATCAAGACGCGCATTGCCCCGACGGTCTGTTGCCGGAGATTCAATTAGACGGAGGGAAGGTTTATCGGCACGAGAAATGCTGGGAAGATATATGCTACGCCATTTCGGAGGCTCATCACATGGTTTATGTTGTTGGCTGGTCCGTTTTCCATAAGATTAAGCTTGTTAGGGAACCCACGAAGCCTTTGCCGCGTGGCGGAGACTTGACCCTTGGCGAGTTGCTCAAGTACAAGTCTCAAGAAGGAGTTAGGGTTCTCTTGATGGTTTGGGATGACAAGACTTCACATGATAAGTTCTTCTTCAAGTCGGCCGGAGTAATGCAAACTCATGATGAGGAAACGAAGAAGTTTTTTAAACATTCCTCTGTTATATGTGTTCTGGCGCCTCGCTATGGTAGCAGCAAGCTGAGCTTCTTGAAGCAGCAGGTTGTTGGAACTGTCTTCACACACCACCAAAAATGTGTTATTGTGGACACACAGGCTCCTGGCAATGACAGAAAGATAACCGTTTTTATGGGAGGTCTTGATATGTGTGATGGTCGCTATGACACACCCCAGCATCGACTTTTCAAGGATCTTGACACCGTATTTGATGGTGATTTCCACAATCCTACATTTCCTGCTGGAATGAAGGCTCCAAGGCAACCGTGGCATGATTTACACTGCAGAATAGATGGGCCTGCAGCATATGACATTCTTATTAATTTTGAGCAGCGATGGAGAAAATCCACTAAGTGGAAAGAGTTTGCTTTAATGTTCAAAAAAGCTTCTCAGTGGAATGACGATGCATTAATACGAATAGAACGGATCTCCTGGATAACAAGTCCTGCCATTCCTCCTTCAAAGGAAAAGCATACAATTGTTCCGGATGACGACCCAAGAGTATGGGTTTCTCAAGAAGCTGATCCTGAAACCTGGCATGTTCAGATCTTCCGCTCTATTGACTCCGGATCCCTGAAAGGATTTCCCAAGCGTGTTGATGTTGCTTTGTCGCAGAATCTTATCTGGGCTGACAATCTTATCCCAATGGAACTGGCACTGAAAATTGTTAGTAAAATCAGAGCAAAAGAGAGATTTGCTGTTTATATTATTTTACCAATGTGGCCAGAAGGTGATCCAAAAACTGGAGCTATGCAAGAAATCCTCTTTTGGCAGAGCCAGACAATGCAGATGATGTATCAAGTTGTTGCTAGAGAATTGAAATCAATGCAGCTTGACGATGTACGCTTGCAAGACTACCTCAACTTTTATTGCCTTGGAAATCGGGAAGCATTCAACGAAGAACCCTCAAGTGCAAATAATGGATCCGTCTCAGGAGCATATGAGCATCGCCGATTTATGATTTATGTGCATGCTAAGGGGATGATTGTCGATGATGAGTATGTCATAGTGGGGTCTGCTAATATAAACCAAAGATCTATGGCTGGCACTAAGGATACTGAGATAGCCATGGGTGGATATCAACCCCATTACACCTGGTCTGGGAAGAAAAGACATCCATATGGTCAGATTTATGGTTATAGAATGTCACTGTGGGCAGAGCATCTTGGCATGTCGGAAGAAATTTTCAGGGAACCGGAGAGTTTGGAGTGTGTGCGTAAAGTGAATGAAATTGCCGAAGAAAACTGGAGAAGATATGTTTCTGATGAATTTTTTGAGCTGCAAGGACATCTCCTGAGGTATCCCTTACAGGTGGATCAGGATGGGACGGTTAGTGCTCTCTCTGGTTGCGACACTTTCCCAGATGCCGGGGGTAAGATACTCGGGACTCACTCTCCAACAATTCCAGATATCCTAACAACATAA 2445 0.4867 MAETGNGNGITYLHGDLELTIIEARHLPNMDIVSERLRRCVTACDTINFHSAEPAAADGTSNPPSSARRHRGKIITSDPYVTVTVPQATVARTRVIRNAQNPRWDERFHIPLAHPLVDLEFRVKDDDVFGAETIGTVKIPATRIATGDVISGWFDLLNSSGKPPKANAALRLEMKFTAVQDNPLYRSGIAADPEHRGVRHTYFPVRRGSSVRLYQDAHCPDGLLPEIQLDGGKVYRHEKCWEDICYAISEAHHMVYVVGWSVFHKIKLVREPTKPLPRGGDLTLGELLKYKSQEGVRVLLMVWDDKTSHDKFFFKSAGVMQTHDEETKKFFKHSSVICVLAPRYGSSKLSFLKQQVVGTVFTHHQKCVIVDTQAPGNDRKITVFMGGLDMCDGRYDTPQHRLFKDLDTVFDGDFHNPTFPAGMKAPRQPWHDLHCRIDGPAAYDILINFEQRWRKSTKWKEFALMFKKASQWNDDALIRIERISWITSPAIPPSKEKHTIVPDDDPRVWVSQEADPETWHVQIFRSIDSGSLKGFPKRVDVALSQNLIWADNLIPMELALKIVSKIRAKERFAVYIILPMWPEGDPKTGAMQEILFWQSQTMQMMYQVVARELKSMQLDDVRLQDYLNFYCLGNREAFNEEPSSANNGSVSGAYEHRRFMIYVHAKGMIVDDEYVIVGSANINQRSMAGTKDTEIAMGGYQPHYTWSGKKRHPYGQIYGYRMSLWAEHLGMSEEIFREPESLECVRKVNEIAEENWRRYVSDEFFELQGHLLRYPLQVDQDGTVSALSGCDTFPDAGGKILGTHSPTIPDILTT 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211527g00006 814 SUPERFAMILY Phospholipase D/nuclease 200 464 - -
Stsc211527g00006 814 PIRSF PLD_plant 3 552 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc211527g00006 814 PIRSF PLD_plant 548 814 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc211527g00006 814 SMART C2_3c 16 153 IPR000008 -
Stsc211527g00006 814 ProSiteProfiles C2 domain profile. 1 154 IPR000008 -
Stsc211527g00006 814 CDD C2_plant_PLD 12 177 - -
Stsc211527g00006 814 Gene3D Endonuclease Chain A 538 705 - -
Stsc211527g00006 814 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 176 IPR035892 -
Stsc211527g00006 814 PANTHER PHOSPHOLIPASE D 10 548 IPR015679 -
Stsc211527g00006 814 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 659 686 IPR001736 GO:0003824
Stsc211527g00006 814 Pfam Phospholipase D C terminal 733 803 IPR024632 -
Stsc211527g00006 814 Gene3D C2 domain 13 184 IPR035892 -
Stsc211527g00006 814 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 359 394 IPR001736 GO:0003824
Stsc211527g00006 814 SMART pld_4 359 394 IPR001736 GO:0003824
Stsc211527g00006 814 SMART pld_4 659 686 IPR001736 GO:0003824
Stsc211527g00006 814 FunFam Phospholipase D delta 231 475 - -
Stsc211527g00006 814 Gene3D Endonuclease Chain A 229 479 - -
Stsc211527g00006 814 Pfam Phospholipase D Active site motif 359 394 IPR001736 GO:0003824
Stsc211527g00006 814 Pfam Phospholipase D Active site motif 660 686 IPR001736 GO:0003824
Stsc211527g00006 814 Pfam C2 domain 15 156 IPR000008 -
Stsc211527g00006 814 SUPERFAMILY Phospholipase D/nuclease 550 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211527g00006 Stsc-Chr211527 28458 35082 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211527g00006 1 650 Phospholipase D Gene Family (Wang group) AT4G35790 64.580 0.0 901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211527g00006 K01115 - gmx:100814486 1336.63