Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211525g00015 ATGTTTTCCCCACCACTCTCAACAACTTCCCTCCCTCCAAAACCTTACCTCTCTCACCCACTCTCCTTCACACTTCACCAAACTCCCTTCCCTCGCTCTCGCCATTCGTTTGCTCCTTCAATCTCCTGCGGCATTAGAGAACTCCGACAAAGAATCGACACCGTTAAGAACACTCACAAGATCACCGAAGCCATGAGGCTCGTCGCCGCCGCCAGGGTCCGACGGGCCCAAGAAGCCGTCCTTAACGGCCGTCCCTTCGCCGAGACGCTTGTCGAAGTCTTGCACGACATCAACTGCCGTCTCCGTGACGATGACGTCATCGTCCCGCTAACTGACGTCAGGCCCGTCAAAACCGTCGCGCTCGTTGTCGTCACCGGAGATCGCGGCCTCTGCGGCGGTTTCAATAACACCGTCATGAAGAAAGCTGAAACAAGGATCCAAGAGCTAAACAAGCTTGGCTTGGATTGCGTTGTGATCAGCGTTGGGAAGAAGGGGAACGCGTTTTTCAGCCGCAGGGGAAGTGTTAGGGTTGATAGGTTCGTTGAATGTGGGAGCTTCCCCACTGTGAAAGAAGCTCAAACCATTGCTGATGACGTGTACTCACTGTTTGTTACAGAGGAGGTTGATAAGGTTGAGATTGTTTACACCAAGTTTGTGTCATTGGTGAAGTTTGATCCTGTGATTCAAACTCTGTTGCCGTTGACGGTGAAAGGCGAGGTTCGCGACATGAATGGGAACTGCATTGATGCCGTTGATGATGAGTACTTTAGGTTGACGACGAAGGAAGGGAAGTTGGCAGTGGAGAGGGATGTTGCTATGAGGAAGAAGAAGGAGAAAGGAGGGGAATTCGAGCCACCGCCGATTATGGAGTTTGAGCAGGATCCGGTTCAGATTCTTGATGCTATGTTGCCTCTGTATTTGAACAGCCAGATCTTGAGGGGCTTGCAGGAATCACTGGCGAGTGAGCTCGCCGCTAGGATGGCTGCAATGTCTAATGCAACTGATAATGCAATCGAGTTGAAGAAGAGTCTTTCGGTTGCTTATAATCGCGAACGGCAGGCGAAGATCACAGGGGAGATATTGGAGATTGTGGCTGGAGCTGAGGCACTAACACCAGTTGATTGA 1125 0.5138 MFSPPLSTTSLPPKPYLSHPLSFTLHQTPFPRSRHSFAPSISCGIRELRQRIDTVKNTHKITEAMRLVAAARVRRAQEAVLNGRPFAETLVEVLHDINCRLRDDDVIVPLTDVRPVKTVALVVVTGDRGLCGGFNNTVMKKAETRIQELNKLGLDCVVISVGKKGNAFFSRRGSVRVDRFVECGSFPTVKEAQTIADDVYSLFVTEEVDKVEIVYTKFVSLVKFDPVIQTLLPLTVKGEVRDMNGNCIDAVDDEYFRLTTKEGKLAVERDVAMRKKKEKGGEFEPPPIMEFEQDPVQILDAMLPLYLNSQILRGLQESLASELAARMAAMSNATDNAIELKKSLSVAYNRERQAKITGEILEIVAGAEALTPVD 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211525g00015 374 NCBIfam ATP synthase F1 subunit gamma 44 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc211525g00015 374 ProSitePatterns ATP synthase gamma subunit signature. 356 369 IPR023632 -
Stsc211525g00015 374 Coils Coil 45 65 - -
Stsc211525g00015 374 FunFam ATP synthase gamma chain 109 235 - -
Stsc211525g00015 374 FunFam ATP synthase gamma chain, chloroplastic 43 110 - -
Stsc211525g00015 374 PANTHER ATP SYNTHASE GAMMA CHAIN 39 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc211525g00015 374 Gene3D ATP synthase, gamma subunit, helix hairpin domain 266 370 - -
Stsc211525g00015 374 Gene3D ATP synthase, gamma subunit, helix hairpin domain 43 106 - -
Stsc211525g00015 374 Hamap ATP synthase gamma chain [atpG]. 42 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc211525g00015 374 Pfam ATP synthase 45 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc211525g00015 374 Gene3D - 108 235 - -
Stsc211525g00015 374 PRINTS ATP synthase gamma subunit signature 209 226 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc211525g00015 374 PRINTS ATP synthase gamma subunit signature 116 135 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc211525g00015 374 PRINTS ATP synthase gamma subunit signature 317 336 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc211525g00015 374 PRINTS ATP synthase gamma subunit signature 348 369 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc211525g00015 374 CDD F1-ATPase_gamma 45 367 IPR000131 GO:0015986|GO:0045261|GO:0046933
Stsc211525g00015 374 FunFam ATP synthase gamma chain, chloroplastic 261 370 - -
Stsc211525g00015 374 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 44 370 IPR035968 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211525g00015 Stsc-Chr211525 112810 114367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211525g00015 14 370 Primary Pumps ATPases AT1G15700 68.889 2.22e-169 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211525g00015 K02115 - qsa:O6P43_013711 508.834