Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211525g00009 ATGCCTGAAATTAAGATCGATGAACCCATGGAAAGTGATGAGAGGCCAGTCTTCAAAGATATCAGACGCTACTTCTGTGAATACTGTGGCATTTGCCGGTCTAAAAAGGCCTTAATTACCTCCCACATCAATTCGCAACACCAGGATGAGTTGGAAAAGGCTAGAGCTGATGGAAATAATGAAACACATTGCGAAAAACCCAACAACACTTGCCAACAATGTGGTGCTAGTTTCAAAAAACGTGCTTACTTATTGCAGCACATGCAAAGCCATTCACTTGAGAGGCCATATGTGTGTACGGTTGATGATTGTCAGGCAAGTTATAGAAGGAAGGACCATTTGACTCGTCACCTTCTACAGCATGAAGGGAAAACTTTTAAATGTCCAATTGAGAATTGCAACCTAAGTTTCTCAATACAAGGTAATATGACAAGGCATGTTAAGGAGATGCATGATGAGGATTCTACATCCACAAATGTAGAGAGTAAGCAGTTTATGTGCCCAGAAACTGGATGTGGAAAGGTTTTCAAGTTTGCATCAAAGCTTCGAAAGCATGAAGATTCTCATGTCAAGCTGCAGTCGGTCGATGTAGTGTGCTTGGAGCCTGGTTGCATGAAACATTTCTCTAATAACAAGTGCCTTAAAGAACATATTGAATCCTGCCATCAATATGTAACCTGTGACACTTGTGGAAGTAGGCAACTGAAAAAGAATATTAAAAGGCATCTTCGCACACACGAAGCTGATAAATCGTCGGTGGAGTTCAAATGTGAATTTAAGGGCTGTAGCTGCAGCTTCTCGAGTAAATCTAATCTTGTTACACATAAGAAGGCCGTGCACTTTAAAGAAAAACCTTTTGCATGTGGCTTTCCTGAGTGTGGCATGAGATTTGCTTACAAACATGTGAGAGATAAACACGAAAAAACTGGGAAACATGTTTTTACCCATGGTGATTTTGAAGAAGCTGATGAGCAATTCAGATCTAGGCCAAGGGGTGGGAGGAAGAGAGTGTGTCCTACAGTTGAAATGTTGGTCAGGAAAAGGGTTACACCACCTAGTCAATTGGAGAATTTGTTATTTATGCAGACTGACCAGATGAATTGA 1104 0.4094 MPEIKIDEPMESDERPVFKDIRRYFCEYCGICRSKKALITSHINSQHQDELEKARADGNNETHCEKPNNTCQQCGASFKKRAYLLQHMQSHSLERPYVCTVDDCQASYRRKDHLTRHLLQHEGKTFKCPIENCNLSFSIQGNMTRHVKEMHDEDSTSTNVESKQFMCPETGCGKVFKFASKLRKHEDSHVKLQSVDVVCLEPGCMKHFSNNKCLKEHIESCHQYVTCDTCGSRQLKKNIKRHLRTHEADKSSVEFKCEFKGCSCSFSSKSNLVTHKKAVHFKEKPFACGFPECGMRFAYKHVRDKHEKTGKHVFTHGDFEEADEQFRSRPRGGRKRVCPTVEMLVRKRVTPPSQLENLLFMQTDQMN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211525g00009 367 Gene3D Classic Zinc Finger 223 282 - -
Stsc211525g00009 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 126 IPR013087 -
Stsc211525g00009 367 Gene3D Classic Zinc Finger 97 122 - -
Stsc211525g00009 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 126 156 IPR013087 -
Stsc211525g00009 367 ProSitePatterns Zinc finger C2H2 type domain signature. 288 312 IPR013087 -
Stsc211525g00009 367 Gene3D Classic Zinc Finger 10 96 - -
Stsc211525g00009 367 ProSitePatterns Zinc finger C2H2 type domain signature. 167 189 IPR013087 -
Stsc211525g00009 367 Pfam Zinc finger, C2H2 type 97 121 IPR013087 -
Stsc211525g00009 367 Pfam Zinc finger, C2H2 type 126 151 IPR013087 -
Stsc211525g00009 367 Pfam Zinc finger, C2H2 type 70 91 IPR013087 -
Stsc211525g00009 367 Pfam Zinc finger, C2H2 type 255 280 IPR013087 -
Stsc211525g00009 367 Pfam Zinc finger, C2H2 type 165 189 IPR013087 -
Stsc211525g00009 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Stsc211525g00009 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 285 IPR013087 -
Stsc211525g00009 367 PANTHER ZINC FINGER PROTEIN 13 357 - -
Stsc211525g00009 367 ProSitePatterns Zinc finger C2H2 type domain signature. 128 151 IPR013087 -
Stsc211525g00009 367 Gene3D Classic Zinc Finger 163 189 - -
Stsc211525g00009 367 SUPERFAMILY beta-beta-alpha zinc fingers 107 153 IPR036236 -
Stsc211525g00009 367 SUPERFAMILY beta-beta-alpha zinc fingers 158 190 IPR036236 -
Stsc211525g00009 367 SUPERFAMILY beta-beta-alpha zinc fingers 236 296 IPR036236 -
Stsc211525g00009 367 Gene3D Classic Zinc Finger 283 309 - -
Stsc211525g00009 367 ProSitePatterns Zinc finger C2H2 type domain signature. 257 280 IPR013087 -
Stsc211525g00009 367 SUPERFAMILY beta-beta-alpha zinc fingers 70 121 IPR036236 -
Stsc211525g00009 367 ProSitePatterns Zinc finger C2H2 type domain signature. 199 222 IPR013087 -
Stsc211525g00009 367 ProSitePatterns Zinc finger C2H2 type domain signature. 99 121 IPR013087 -
Stsc211525g00009 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 194 IPR013087 -
Stsc211525g00009 367 FunFam Zinc finger 45-like 70 92 - -
Stsc211525g00009 367 Gene3D Classic Zinc Finger 123 162 - -
Stsc211525g00009 367 SMART c2h2final6 126 151 IPR013087 -
Stsc211525g00009 367 SMART c2h2final6 286 312 IPR013087 -
Stsc211525g00009 367 SMART c2h2final6 69 91 IPR013087 -
Stsc211525g00009 367 SMART c2h2final6 255 280 IPR013087 -
Stsc211525g00009 367 SMART c2h2final6 197 222 IPR013087 -
Stsc211525g00009 367 SMART c2h2final6 24 47 IPR013087 -
Stsc211525g00009 367 SMART c2h2final6 97 121 IPR013087 -
Stsc211525g00009 367 SMART c2h2final6 165 189 IPR013087 -
Stsc211525g00009 367 SMART c2h2final6 225 246 IPR013087 -
Stsc211525g00009 367 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211525g00009 Stsc-Chr211525 60190 63242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211525g00009 93 315 C2H2 Transcription Factor Family AT1G72050 51.449 4.84e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc211525g00009 zf-C2H2 0.011 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211525g00009 K09191 - gmx:100801812 556.984