Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211525g00005 ATGAGTGTTGTGGGTTTTGACATTGGTAATGAGAACTGTGTCATTGCTGTAGTAAAGCAACGGGGGATCGACGTTTTGCTGAATGACGAATCCAAGCGCGAAACCCCTTCTGTGGTATGCTTCGGAGAGAAGCAAAGGTTTTTGGGCTCTGCTGGCGCTGCTTCTGCTATGATGCACTTGAAGTCGACGGTGTCACAATTGAAGAGACTGATTGGGAGGAAATTTGCAGATGCTGATGTCCAAAGGGAGCTGAAAATGCTTCACGTTGCTACGTCTGAAGGCCCAGATGGCGGCATTTTGATTCACTTGGAATACTTGAACGGGACTCATAAGTTCACACCAGTTCAGATAATGTCCATGCTCTTGGCTCACTTGAAGACGATGACTGAGAAAGATCTGGGTTTGCCTGTTTTGGATTGTGTTATTGGGATCCCATCATACTTTAACGACTTGCAGAGAAGAGCATATCTGGATGCAGCAAAAATTTCTGGGTTGAAGCCTTTGAGATTGATCCATGATTGTACTGCAACTGCTCTTAGTTATGGAATTTACAAAACAGATATTCACAGTACAGGTCCAATTAATGTTGCATTTATTGACATTGGTCACTGTGATACTCAGGTTGCAATTGCAGCATTTGAGTTTGGGCAAATGAAGATACTTTCACATGCATCTGACAGGAGCTTAGGAGGGAGGGATTTTGATGAAGTTCTATTTAATCATTTCGCAGCACAGTTTAAGGAACGGTACAACATTGACGTGTATACTAATTTTAAAGCAAGCATTAGGCTACGCGCAACATGCGAGAAGTTGAAGAAAGTTTTGAGTGCAAATCTAGAGGCACCACTAAATATTGAGTGCTTGATGGATGAGAAAGATGTTAAGGGCTTTATCACAAGGGAAGAATTTGAGAAGCTGACATCGGAATTATTGGAGAGAGTTTCTATTCCTTGCAAAAGAGCATTAGTTGATGCACATTTGACTGCGGAGAAAATTTCTTCTGTGGAGCTTGTTGGCTCGGGTTCTAGGATTCCAGCTATTACTAAGAGACTAAGCTATATTTTCAAGAAAGAACCCAGCCGAAAGCTGAATGCAAGTGAGTGTGTAGCTCGTGGTTGTGCTTTACAGTGTGCAATGCTACATCCCAATTACCGTGTGAGAGAATATGAGGTCCAGGATTCTTTTCCTTTTTCGGTTGGACTTTCATTAGACGAATATCCAATTAGTGCAGGATCAAATGGTGCACTATTCCCCAATGGCCAACCCATTCCAAGTGTTAAAGTCCTATCATTTCATCGAACCAATTTGTTCCATTTGGAAGCCTTCTATGCTAATCAAAATGAACTACCACCTGGGGCATCTCCTAAACTTGGTTGCTTCACGATTGGTCCTTTCCAAGGATCCAATGGTAGCAAGACAAAAGTTAAAGTTAGAGTTCAATTAGATTTGCATGGCATTGTCAGCGTTGAATCAGCTACATTGATCAGAGATCAGGTGGATGATTCAGTTACAATGGGTGATTATCATTCAAATTCTGATCCAATGGATGTTGACTCTGTTCCAGATACAATTGCCAATGGAGATGATGATATTTCTGCTGATGCTACAAGGAAAGGCAAAAGTAACAGAAGGCTTAATGTGCCAGTAAGTGAGAATATTGATGGTGCAATGACAAAGGCTGAAATATCGGAAGCTTGTGAAAAAGAACTACAGTTGGCCCAACAGGACAGAACTGTGGAGCTAACCAAAGAAAAGAAGAATACCTTGGAGTCTTATGTCTATGATATGAGAAATAAGCTATTCAACACATATCGGAGTTTTGCAACTGATGAAGAGAGGGATGATATATCCAAGATGCTTCAAGAGACTGAGGATTGGCTTTATGAGGATGGTTATGATGAAACTGAACTTGCTTACACTTCAAAACTAGAAGACCTAAATAAGCTGGTGGATTCAATCGAGAATAGGTATAAAGACGAAGAAAAAAGAAATCTAGCAGCAAGAGATTTGTTAAAATGCATTTCAGAGCATCGCACGTTTGCAGATTCTCTTCCACCCCAAGACAAGGAACTGGTACTCAATGAGTGTAATAAAGCAGAGCAGTGGCTAAGAGAGAAGATTCAGCAACAAGAATCTTTGCCCAAGAACATTGACCCAATATTTTGGTCAAGTGATATTAAGGGCAAGACAGAGGATCTAAAAATAATGTGTCAACGGATATTGGAATGCAGGACTTCTCCGATCGAAGAAGACATTGGCGAAGACAAGCTGGATGCTTCAAATCAGCCATGA 2292 0.411 MSVVGFDIGNENCVIAVVKQRGIDVLLNDESKRETPSVVCFGEKQRFLGSAGAASAMMHLKSTVSQLKRLIGRKFADADVQRELKMLHVATSEGPDGGILIHLEYLNGTHKFTPVQIMSMLLAHLKTMTEKDLGLPVLDCVIGIPSYFNDLQRRAYLDAAKISGLKPLRLIHDCTATALSYGIYKTDIHSTGPINVAFIDIGHCDTQVAIAAFEFGQMKILSHASDRSLGGRDFDEVLFNHFAAQFKERYNIDVYTNFKASIRLRATCEKLKKVLSANLEAPLNIECLMDEKDVKGFITREEFEKLTSELLERVSIPCKRALVDAHLTAEKISSVELVGSGSRIPAITKRLSYIFKKEPSRKLNASECVARGCALQCAMLHPNYRVREYEVQDSFPFSVGLSLDEYPISAGSNGALFPNGQPIPSVKVLSFHRTNLFHLEAFYANQNELPPGASPKLGCFTIGPFQGSNGSKTKVKVRVQLDLHGIVSVESATLIRDQVDDSVTMGDYHSNSDPMDVDSVPDTIANGDDDISADATRKGKSNRRLNVPVSENIDGAMTKAEISEACEKELQLAQQDRTVELTKEKKNTLESYVYDMRNKLFNTYRSFATDEERDDISKMLQETEDWLYEDGYDETELAYTSKLEDLNKLVDSIENRYKDEEKRNLAARDLLKCISEHRTFADSLPPQDKELVLNECNKAEQWLREKIQQQESLPKNIDPIFWSSDIKGKTEDLKIMCQRILECRTSPIEEDIGEDKLDASNQP 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211525g00005 763 Gene3D - 557 669 IPR029048 -
Stsc211525g00005 763 FunFam Heat shock 70 kDa protein 4 1 79 - -
Stsc211525g00005 763 Coils Coil 643 670 - -
Stsc211525g00005 763 Gene3D - 186 360 - -
Stsc211525g00005 763 Pfam Hsp70 protein 3 657 IPR013126 GO:0005524|GO:0140662
Stsc211525g00005 763 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Stsc211525g00005 763 SUPERFAMILY Actin-like ATPase domain 192 381 IPR043129 -
Stsc211525g00005 763 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 559 657 IPR029048 -
Stsc211525g00005 763 CDD HSPA4_like_NDB 2 380 - -
Stsc211525g00005 763 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 385 590 IPR029047 -
Stsc211525g00005 763 PRINTS 70kDa heat shock protein signature 332 348 - -
Stsc211525g00005 763 PRINTS 70kDa heat shock protein signature 2 15 - -
Stsc211525g00005 763 PRINTS 70kDa heat shock protein signature 30 42 - -
Stsc211525g00005 763 PRINTS 70kDa heat shock protein signature 472 488 - -
Stsc211525g00005 763 PRINTS 70kDa heat shock protein signature 140 160 - -
Stsc211525g00005 763 PRINTS 70kDa heat shock protein signature 363 383 - -
Stsc211525g00005 763 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 385 517 IPR029047 -
Stsc211525g00005 763 Gene3D - 5 374 - -
Stsc211525g00005 763 Gene3D - 38 113 - -
Stsc211525g00005 763 FunFam Heat shock 70 kDa protein 4 38 113 - -
Stsc211525g00005 763 Gene3D Actin; Chain A, domain 4 230 313 - -
Stsc211525g00005 763 PANTHER HSC70CB, ISOFORM G-RELATED 1 743 - -
Stsc211525g00005 763 FunFam Heat shock 70 kDa protein 4 110 197 - -
Stsc211525g00005 763 FunFam Heat shock 70 kDa protein 4 557 667 - -
Stsc211525g00005 763 FunFam Heat shock 70 kDa protein 4 230 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211525g00005 Stsc-Chr211525 21344 28894 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211525g00005 4 653 Calmodulin-binding Proteins AT1G16030 29.697 2.55e-82 273