Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211523g00004 ATGGATTCCACTTCTCACTTCTTCAACTCTCCCACTTCCGATCACTCTTCCTCATCCTCCTTTGGCTCCTCCCCAGAGTCGTTTTCGTGGAATGGATACCTCCCGTTCAACGAGAACGACCCTGAGGAGATGCTCCTCTATGGCATGATTGCCACCGCAGACACCCCTCGTCAGCGGCCCCTTGAGGCCGCTAAGAGGGTGAAGGAGGAGGAGGTAAGTTCCGAGGAAAATGGCGGCGACTGCGCTGCAAACAAAAGGAAGGAGAAGTCGTACAGAGGCGTCAGGAGAAGACCATGGGGAAAGTTTGCTGCCGAGATAAGAGACTCAACTCGACACGGGATAAGGGTGTGGCTGGGGACATTCGACAGCGCGGAAGCGGCGGCTTTGGCTTATGATCAAGCGGCTTTTTCGATGAGGGGAACGGGGGCAATCCTTAATTTCCCGGTGGAGACGGTGAGGGAGTCGCTTAGGGAGATGAACTATGGTTGTGGTGATGGAGAAGAAGGGTGCTCCCCTGTTATAGCCTTGAAGAGGAAGCATTCATTGAGGAGGAAAATTGGTGTGAAGAAGAACAACAACAATGTTAAGGAGAGGGACAATGTTGATAATGCAGTGGTGTTTGAGGATCTTGGTGCTGATTACTTGGAACAATTGTTGATGTCATCTGATCAGATTCCTAATCCTTGGTGA 690 0.513 MDSTSHFFNSPTSDHSSSSSFGSSPESFSWNGYLPFNENDPEEMLLYGMIATADTPRQRPLEAAKRVKEEEVSSEENGGDCAANKRKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGTGAILNFPVETVRESLREMNYGCGDGEEGCSPVIALKRKHSLRRKIGVKKNNNNVKERDNVDNAVVFEDLGADYLEQLLMSSDQIPNPW 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211523g00004 229 Pfam AP2 domain 90 140 IPR001471 GO:0003700|GO:0006355
Stsc211523g00004 229 MobiDBLite consensus disorder prediction 1 26 - -
Stsc211523g00004 229 MobiDBLite consensus disorder prediction 57 89 - -
Stsc211523g00004 229 SUPERFAMILY DNA-binding domain 90 150 IPR016177 GO:0003677
Stsc211523g00004 229 CDD AP2 89 149 IPR001471 GO:0003700|GO:0006355
Stsc211523g00004 229 Gene3D AP2/ERF domain 89 150 IPR036955 GO:0003700|GO:0006355
Stsc211523g00004 229 PANTHER DNA-BINDING DOMAIN 46 220 IPR044808 GO:0003700|GO:0009873
Stsc211523g00004 229 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
Stsc211523g00004 229 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Stsc211523g00004 229 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Stsc211523g00004 229 MobiDBLite consensus disorder prediction 59 88 - -
Stsc211523g00004 229 FunFam Ethylene-responsive transcription factor 2 89 150 - -
Stsc211523g00004 229 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211523g00004 Stsc-Chr211523 31183 32241 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211523g00004 34 223 AP2-EREBP Transcription Factor Family AT3G23240 58.333 8.83e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc211523g00004 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211523g00004 K14516 - gmx:100804481 276.944