Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211523g00001 ATGAATGAAGATGGATCAAAGGGTAGGACCAAGGATGACGGCGGAGATGTCCGATATAGAGGCGTGCGCCGCCGTCCTTGGGGGAAGTTCGCGGCCGAGATTCGTGACTCCACTAGGCAGGGTCAGAGGGTTTGGCTTGGTACATTCAACACGGCTGAGGATGCAGCGAGGGCTTATGATAGAGCGGCTTATGCCATGAGAGGTGCATTTGCTATCCTTAACTTCCCAAATGAGTATCCTATGTCAGGTTACGGTGGTAATAACCGCACCGGTGGAGGTGGCAGTGGCGCCTCTTATTCCTCCGGCGCTTCGTCTTCCTCTAATTCATGGCAGGGCAATGTGGAAGGCAGGGGAAGGAGTGAAGTGTTTGAGTTTGAGTACTTGGATGACAAATTGTTGGAGGAGCTTCTTGAATGCGAAGAAAAGAAGAAAAATGGACCATGA 444 0.5135 MNEDGSKGRTKDDGGDVRYRGVRRRPWGKFAAEIRDSTRQGQRVWLGTFNTAEDAARAYDRAAYAMRGAFAILNFPNEYPMSGYGGNNRTGGGGSGASYSSGASSSSNSWQGNVEGRGRSEVFEFEYLDDKLLEELLECEEKKKNGP 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211523g00001 147 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Stsc211523g00001 147 MobiDBLite consensus disorder prediction 1 20 - -
Stsc211523g00001 147 PANTHER DNA-BINDING DOMAIN 13 142 IPR044808 GO:0003700|GO:0009873
Stsc211523g00001 147 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Stsc211523g00001 147 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Stsc211523g00001 147 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Stsc211523g00001 147 MobiDBLite consensus disorder prediction 81 116 - -
Stsc211523g00001 147 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Stsc211523g00001 147 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Stsc211523g00001 147 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Stsc211523g00001 147 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Stsc211523g00001 147 MobiDBLite consensus disorder prediction 81 115 - -
Stsc211523g00001 147 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211523g00001 Stsc-Chr211523 3614 4123 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211523g00001 13 144 AP2-EREBP Transcription Factor Family AT3G23230 59.398 1.74e-43 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc211523g00001 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211523g00001 - - gmx:100775830 159.073