Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211522g00024 ATGGCGCATCGAAGAACGAAGCTTCTTCTCATTCTTCTATGCGCTCTCTGCTATTCTCTCAATGCTATCGCTGGAAAGAGCTACTATGATATACTTCAAGTTTCCAAGGGTGCTTCGGAGGAGCAGATAAAGAGGGCGTATAGGAAGCTTGCATTGAAGTACCACCCTGATAAGAACCAGGGCAACGAAGAAGCTAATAAGAAATTTGCCGAAATTAGCAATGCATATGAGGTGTTGTCGGATAGCGAGAAGAGAAGCATTTATGACAGATATGGTGAGGAGGGTTTGAAGCAGCATGCTGCCAGTGGTGGCAGAGGTGGTGGAATGAACATCCAAGACATTTTTAGCTCTTTCTTTGGTGGTGGTTCAATGGATGAGGAAGAGAAGATTGTGAAAGGTGATGATGTGATTGTTGAATTGGATGCAAGCCTTGAAGATTTGTACATGGGAGGTTCCTTGAAGGTTTGGAGGGAGAAAAACGTGTTAAAGCCAGCACCAGGAAAAAGACGCTGCAACTGTAGAAATGAGGTTTATCACAAGCAAATTGGGCCTGGGATGTTTCAGCAGATGACAGAGCAGGTCTGTGAGCAGTGTCCTAATGTCAAATATGTAAGGGAGGGCTATTTTATCACCGTTGATATAGAGAAAGGCATGCAAGATGGTCAGGAGGTACTATTTTATGAGGATGGTGAGCCTATCATAGACGGAGAATCTGGAGATTTAAGGTTCCGTATCCGAACTGCACCCCATGATGTCTTCAGAAGGGAAGGCAATGATTTGCACACTACTGTCACTATAACCCTGGTTCAAGCCCTTGTTGGATTTGAGAAGACCATCAAACATCTAGATGAGCATCTGGTGGATATAAGCACAAAGGCAATTACAAAGCCAAAGCAAGTGAAGAAGTTCAAAGGGGAGGGTATGCCATTGCATATGAGCACGAAGAAGGGAGATCTTTACATCACTTTTGAGGTTCTATTCCCCACATCACTAACGGAGGAACAAAAGAAACAGATACAAGCAATTCTCGGTTAG 1035 0.4386 MAHRRTKLLLILLCALCYSLNAIAGKSYYDILQVSKGASEEQIKRAYRKLALKYHPDKNQGNEEANKKFAEISNAYEVLSDSEKRSIYDRYGEEGLKQHAASGGRGGGMNIQDIFSSFFGGGSMDEEEKIVKGDDVIVELDASLEDLYMGGSLKVWREKNVLKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCEQCPNVKYVREGYFITVDIEKGMQDGQEVLFYEDGEPIIDGESGDLRFRIRTAPHDVFRREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDISTKAITKPKQVKKFKGEGMPLHMSTKKGDLYITFEVLFPTSLTEEQKKQIQAILG 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211522g00024 344 Pfam DnaJ C terminal domain 138 328 IPR002939 -
Stsc211522g00024 344 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 11 10 343 - -
Stsc211522g00024 344 FunFam DnaJ subfamily B member 11 249 344 - -
Stsc211522g00024 344 PRINTS DnaJ domain signature 64 84 IPR001623 -
Stsc211522g00024 344 PRINTS DnaJ domain signature 47 62 IPR001623 -
Stsc211522g00024 344 PRINTS DnaJ domain signature 29 47 IPR001623 -
Stsc211522g00024 344 PRINTS DnaJ domain signature 84 103 IPR001623 -
Stsc211522g00024 344 Pfam DnaJ domain 28 89 IPR001623 -
Stsc211522g00024 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 131 254 IPR008971 GO:0006457|GO:0051082
Stsc211522g00024 344 FunFam DnaJ protein ERDJ3B 24 128 - -
Stsc211522g00024 344 Gene3D - 129 248 - -
Stsc211522g00024 344 CDD DnaJ 28 81 IPR001623 -
Stsc211522g00024 344 Gene3D - 249 343 - -
Stsc211522g00024 344 ProSitePatterns Nt-dnaJ domain signature. 69 88 IPR018253 -
Stsc211522g00024 344 SUPERFAMILY Chaperone J-domain 24 123 IPR036869 -
Stsc211522g00024 344 Gene3D DnaJ domain 24 128 IPR036869 -
Stsc211522g00024 344 CDD DnaJ_C 134 331 - -
Stsc211522g00024 344 ProSiteProfiles dnaJ domain profile. 27 92 IPR001623 -
Stsc211522g00024 344 SMART dnaj_3 26 84 IPR001623 -
Stsc211522g00024 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 252 338 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211522g00024 Stsc-Chr211522 104364 107915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211522g00024 26 118 C2H2 Transcription Factor Family AT1G74250 37.374 4.45e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211522g00024 K09517 - gmx:100799701 639.417