LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211522g00020	ATGGAAGTTCAGGTTGGAGCAGTATCAAACAGAAGCTGTAACGATTGCCACACAACCTCCACCCCTCTTTGGAGGGCTGGTCCAGATGGTCCTAGGTCTCTTTGCAATGCATGTGGGCTAAGGTACAGGAAAAGGAGGAAAGCCCTGGATAAAGGGGGAGCAAAGAAAAGCAGGAAGAGGAGTAATGGAGCAACAAGTGGGCATGGCCATAGCCATGATCATGATGATGAAGTTATTTTTGGTTGCAACTTGGAGCCTTATACATTACATGGAAGAAGGCAATTCAAGCTAAAAGAGGAAGAAGAAGCTGCTATATTGTTGATGGCTCTTTCTTGTGCTTATTAG	345	0.4522	MEVQVGAVSNRSCNDCHTTSTPLWRAGPDGPRSLCNACGLRYRKRRKALDKGGAKKSRKRSNGATSGHGHSHDHDDEVIFGCNLEPYTLHGRRQFKLKEEEEAAILLMALSCAY	114

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211522g00020	114	ProSitePatterns	GATA-type zinc finger domain.	13	38	IPR000679	GO:0006355\|GO:0043565
	Stsc211522g00020	114	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	9	57	-	-
	Stsc211522g00020	114	PANTHER	OS01G0976800 PROTEIN	9	113	-	-
	Stsc211522g00020	114	CDD	ZnF_GATA	12	60	IPR000679	GO:0006355\|GO:0043565
	Stsc211522g00020	114	MobiDBLite	consensus disorder prediction	46	77	-	-
	Stsc211522g00020	114	Pfam	GATA zinc finger	13	47	IPR000679	GO:0006355\|GO:0043565
	Stsc211522g00020	114	SMART	GATA_3	7	62	IPR000679	GO:0006355\|GO:0043565
	Stsc211522g00020	114	Gene3D	-	9	67	IPR013088	GO:0006355\|GO:0008270
	Stsc211522g00020	114	ProSiteProfiles	GATA-type zinc finger domain profile.	7	43	IPR000679	GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211522g00020	Stsc-Chr211522	87884	88753	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211522g00020	7	113	C2C2-Gata Transcription Factor Family	AT3G06740	44.545	3.24e-23	85.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Stsc211522g00020		GATA	4.8e-18	CL0167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211522g00020	-		-	adu:107492392	194.126