Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211522g00008 ATGTCCTCCGATACTCACGCCGCCACTCACGCTGCCACTCACGCCGCCCCTAATATCAACCCCAGGGGTCTACTCTGCAATGCTGCAGCTGGCGCAGCCGCCGGTGTTATTGCTGCTACATTTGTGTGTCCTTTAGATGTAATCAAAACTAGGTTTCAGGTTCATGGGGTACCGCAACTCCATAATGGACGTGTTAAAGGCAGTGTTATAGTTGGTAGCTTGGAACAAATATTTCACAAGGAGGGGTTGCGTGGCATGTACCGTGGATTGTCTCCCACTGTGCTGGCTTTGCTTCCAAACTGGGCTGTTTATTTTACCATGTATGAACAGCTCAAGAGCCTTCTTCAGTCTAAGGATTGCCATAATCTTTCAGTTGGAGCTAATATGGTGGCTGCTTCTGGTGCTGGAGCTGCTACTACAATGTTTACAAATCCACTTTGGGTTGTCAAGACTAGACTCCAAACACAGGGAATGAGATCTGGTGTTGTGCCATATAGGAGCACTCTTTCTGCATTGAGAAGAATTGCACATGAGGAGGGCATTCGAGGGCTGTACAGTGGTCTTGTACCTGCGCTGGCTGGTATCAGCCATGTGGCCATCCAGTTTCCAACATATGAGAAAATAAAATGCTACTTGGCAACTCAAAGTGACACATCAATGGATAAACTTGGTGCACGAGATGTTGCAATTGCCTCATCAGTCTCCAAAATTTTTGCGTCAACTTTAACATATCCCCATGAGGTTGTACGTTCCAGACTGCAAGAGCAAGGGCACCATTCTGAGAAAAGGTACTCGGGTGTGATTGATTGTGTTCAAAAGGTTTTTCGGCAAGAGGGCGTACCTGGTTTTTACCGTGGGTGTGCCACCAACCTTTTGAGGACAACACCAGCGGCTGTAATCACATTCACCAGCTTTGAAATGATACACCGTTTTCTTGTTTCAGTTTTTCCCTCTGATCCACACCCTCAGATTTTGTGA 978 0.4683 MSSDTHAATHAATHAAPNINPRGLLCNAAAGAAAGVIAATFVCPLDVIKTRFQVHGVPQLHNGRVKGSVIVGSLEQIFHKEGLRGMYRGLSPTVLALLPNWAVYFTMYEQLKSLLQSKDCHNLSVGANMVAASGAGAATTMFTNPLWVVKTRLQTQGMRSGVVPYRSTLSALRRIAHEEGIRGLYSGLVPALAGISHVAIQFPTYEKIKCYLATQSDTSMDKLGARDVAIASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGVIDCVQKVFRQEGVPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSVFPSDPHPQIL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211522g00008 325 ProSiteProfiles Solute carrier (Solcar) repeat profile. 223 311 IPR018108 -
Stsc211522g00008 325 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 25 314 IPR044712 GO:0006862|GO:0055085
Stsc211522g00008 325 SUPERFAMILY Mitochondrial carrier 24 307 IPR023395 -
Stsc211522g00008 325 Gene3D Mitochondrial carrier domain 5 119 IPR023395 -
Stsc211522g00008 325 Gene3D Mitochondrial carrier domain 120 314 IPR023395 -
Stsc211522g00008 325 ProSiteProfiles Solute carrier (Solcar) repeat profile. 22 114 IPR018108 -
Stsc211522g00008 325 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 211 IPR018108 -
Stsc211522g00008 325 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 9 120 - -
Stsc211522g00008 325 PRINTS Mitochondrial carrier protein signature 89 109 IPR002067 GO:0055085
Stsc211522g00008 325 PRINTS Mitochondrial carrier protein signature 27 40 IPR002067 GO:0055085
Stsc211522g00008 325 PRINTS Mitochondrial carrier protein signature 232 254 IPR002067 GO:0055085
Stsc211522g00008 325 PRINTS Mitochondrial carrier protein signature 138 156 IPR002067 GO:0055085
Stsc211522g00008 325 PRINTS Mitochondrial carrier protein signature 40 54 IPR002067 GO:0055085
Stsc211522g00008 325 FunFam NAD+ transporter 121 316 - -
Stsc211522g00008 325 Pfam Mitochondrial carrier protein 24 118 IPR018108 -
Stsc211522g00008 325 Pfam Mitochondrial carrier protein 123 214 IPR018108 -
Stsc211522g00008 325 Pfam Mitochondrial carrier protein 229 313 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211522g00008 Stsc-Chr211522 53243 56903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211522g00008 20 319 Chloroplast and Mitochondria Gene Families AT2G47490 80.000 1.06e-167 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211522g00008 K15115 - gmx:100500213 545.428