Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211522g00004 ATGTTTATTGGGCCACACTTCGGCCCAGACCAGTTACTGGGCCCAAATCACGGCGTTGTGCTATCCAATCCAATTTATAAAAGAGGAGAGCTAGGGTTTTCCATTCGTCTCTTCCACAAAACTCGTATCGGCAGCAGCAGCGAGAGAGAGAGTGGAGCGAAAATGGTGTCTCTGAAACTGCAGAAGCGCCTTGCGGCTAGCGTCCTCAAGTGTGGCAGAGGGAAGGTTTGGCTCGACCCCAATGAAGTCAATGAAATCTCCATGGCCAATTCTCGTCAGAACATAAGGAAGCTGGTTAAGGATGGTTTCATTATCAGGAAGCCCACTAAGATTCACTCCCGTTCACGTGCCCGTAGGATGAAGGAAGCCAAGAGGAAAGGACGTCACTCTGGCTATGGTAAGCGTAAGGGTACCAGGGAGGCAAGGCTCCCAACTAAGATTCTTTGGATGAGGAGAATGCGTGTGCTCAGACGCTTGCTCCGCAAGTACAGGGAATCCAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTATTCAAGAACAAGAGAGTGCTGATGGAGAGCATTCACAAGTCTAAGGCTGAGAAGGCAAGAGAGAAGACCCTCTCTGACCAGTTTGAGGCCAAGCGTGCTAAGAACAAGGCCAGCAGAGAAAGGAAGATTGCTCGTAGGGAGGAGCGATTGGCCCAGGGTCCTGGAGAGAAGCCTGCACCCACTGCTGCCCCTGCTACAGCATCACAGCCTGCCCAAGCAACAAAGAAATCTAAGAAGTGA 795 0.5031 MFIGPHFGPDQLLGPNHGVVLSNPIYKRGELGFSIRLFHKTRIGSSSERESGAKMVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKPAPTAAPATASQPAQATKKSKK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211522g00004 264 SMART Ribosomal_L19e_2 57 200 IPR000196 GO:0003735|GO:0005840|GO:0006412
Stsc211522g00004 264 MobiDBLite consensus disorder prediction 250 264 - -
Stsc211522g00004 264 MobiDBLite consensus disorder prediction 203 264 - -
Stsc211522g00004 264 Hamap 50S ribosomal protein L19e [rpl19e]. 57 203 IPR000196 GO:0003735|GO:0005840|GO:0006412
Stsc211522g00004 264 Gene3D - 56 110 IPR015972 GO:0003735|GO:0005840|GO:0006412
Stsc211522g00004 264 PANTHER 60S RIBOSOMAL PROTEIN L19 55 242 IPR039547 GO:0003723|GO:0003735|GO:0022625
Stsc211522g00004 264 MobiDBLite consensus disorder prediction 203 238 - -
Stsc211522g00004 264 MobiDBLite consensus disorder prediction 111 133 - -
Stsc211522g00004 264 Pfam Ribosomal protein L19e 58 199 IPR000196 GO:0003735|GO:0005840|GO:0006412
Stsc211522g00004 264 Gene3D - 111 242 - -
Stsc211522g00004 264 FunFam Ribosomal protein L19 111 245 - -
Stsc211522g00004 264 FunFam Ribosomal protein L19 55 110 - -
Stsc211522g00004 264 MobiDBLite consensus disorder prediction 111 139 - -
Stsc211522g00004 264 SUPERFAMILY Ribosomal protein L19 (L19e) 57 198 IPR035970 GO:0003735|GO:0005840|GO:0006412
Stsc211522g00004 264 CDD Ribosomal_L19e_E 58 221 IPR033935 GO:0003735|GO:0022625
Stsc211522g00004 264 ProSitePatterns Ribosomal protein L19e signature. 61 80 IPR023638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211522g00004 Stsc-Chr211522 18415 20319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211522g00004 55 264 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 85.377 5.72e-126 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211522g00004 K02885 - gmx:100527501 379.022