Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211522g00003 ATGTGTGGCGGTGCCATAATCTCTGACTTCATCCCCCGCAACCGTTCTCGCCGCCTTACTGCAGCTGAAATCTGGCCCAACACATTCTCTACCAGCCAAGGTCACGACTTTGACTTCGATTTCAATCATCATCATCTCCAACACACACCCGCTCTCAACAAATCTTCTTTGCCGTCAGTTGGTGAACAAGATCAGGGAAACTGCAAGCCCCCCGCGAAGAGGCAGAGGAAGAACCTCTACAGAGGGATCAGGCAGCGTCCATGGGGAAAATGGGCGGCGGAGATTCGCGATCCCAGAAAAGGTGTTCGTGTTTGGCTCGGAACCTTCAACACCGCTGAGGAAGCCGCCAGGGCCTACGACAGAGAAGCACGTAAGATTCGTGGGAAGAAAGCTAAAGTGAACTTCCCCAACGAGGATGACGAATATTCCATTCAAGAATCTCGCAACATTATTCCAACCCTTCCTCCTCCGATTCGAAGATCGAGTAATAATCATCTTCCCCTCTATCATCATGATCAACAGCAGCAATATGGTGGTGCCAACAACTCGGCAAGGACTCTGAACCTCAACTTGGAGTTTGGTTACGATCTGAACCATGGAGGGGCCGTTGGTGGTGGCATCAACGCAGAGCCGTTTGTGAGTTGTGTTGATGAGAATTCTGAGTATGGTTCTGGTTGTGGTTCTGGTTCGGGTTCGGCGTCGGAGGTGGCAGTTGGGTCAAGTGGTGATCAACATCAAGAGGAGAAGAAGAGCTACGAGGTGGAGAAGCTCTCTGAGGAGCTAATGGCTTATGAAAACTACATTGGGTTTTATGATCAGATGCCTTTCTATGATGCACAATCTGCTGCTGCCGCCGCCGCCAACAACAACAACAACGTTGTTCAAGAAAGTGTGGTCGGGGAACTCTGGACCTTCGATGAATGA 924 0.5043 MCGGAIISDFIPRNRSRRLTAAEIWPNTFSTSQGHDFDFDFNHHHLQHTPALNKSSLPSVGEQDQGNCKPPAKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQESRNIIPTLPPPIRRSSNNHLPLYHHDQQQQYGGANNSARTLNLNLEFGYDLNHGGAVGGGINAEPFVSCVDENSEYGSGCGSGSGSASEVAVGSSGDQHQEEKKSYEVEKLSEELMAYENYIGFYDQMPFYDAQSAAAAAANNNNNVVQESVVGELWTFDE 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211522g00003 307 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Stsc211522g00003 307 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Stsc211522g00003 307 PANTHER DNA-BINDING DOMAIN 66 257 IPR044808 GO:0003700|GO:0009873
Stsc211522g00003 307 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Stsc211522g00003 307 MobiDBLite consensus disorder prediction 53 74 - -
Stsc211522g00003 307 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Stsc211522g00003 307 FunFam Ethylene-responsive transcription factor 2 78 137 - -
Stsc211522g00003 307 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Stsc211522g00003 307 CDD AP2 80 137 IPR001471 GO:0003700|GO:0006355
Stsc211522g00003 307 MobiDBLite consensus disorder prediction 224 248 - -
Stsc211522g00003 307 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Stsc211522g00003 307 MobiDBLite consensus disorder prediction 224 241 - -
Stsc211522g00003 307 Pfam AP2 domain 80 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211522g00003 Stsc-Chr211522 15610 17123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211522g00003 1 137 AP2-EREBP Transcription Factor Family AT3G16770 55.714 1.28e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc211522g00003 AP2 9.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211522g00003 K09286 - gmx:100819416 292.352