Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211521g00017 ATGGCAATTTATTCAGTCGCAGCAGCGGCTTCTTCTTCAAAGCTAATTTACCCTCATGCCCCTCCTCCTCCTCCTTCATCTTCATTTTCCACTTCCACTAGCCTCTTCACAACAGCCACCCACTTCTCCTCTTCTTTCCTTAAACCCTCCACAATCCTCCACTTAACTCCTTCTTCCTCCTCTACCCTCACCACCACCACCCACTGCCGCCGCTCCCTCGCTATCCGTGCTGCCCGCGGCAAGTTCGAGCGTAAGAAGCCTCATGTCAACATCGGCACCATCGGCCACGTCGACCACGGCAAGACCACCCTCACCGCCGCTCTCACCATGGCTCTGGCCGCCCTCGGCAACAGCGCTCCCAAGAAGTACGACGAGATTGACGCCGCCCCCGAGGAACGTGCCCGCGGCATCACTATCAACACTGCCACCGTCGAGTACGAGACCGAGAGCCGCCACTACGCCCACGTCGACTGCCCCGGCCACGCTGACTACGTCAAGAATATGATCACCGGTGCCGCACAAATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCCATGCCCCAGACCAAGGAGCACATCCTCCTCGCCAAGCAGGTTGGTGTCCCCAACATGGTGGTTTTCCTCAACAAGCAGGACCAGGTGGATGATGAGGAGCTTCTTGAGCTGGTGGAGCTCGAGGTTCGTGAGCTTCTCTCCTCGTATGAGTTTCCTGGCGACGAAGTCCCGATTATCTCAGGTTCGGCCCTTCTGGCATTGGAGGCTCTGATGGCGAACCCTGCCATCAAGCGCGGTGATAACGATTGGGTGGACAAGATTTATGCCCTCATGGATGCTGTGGATAGCTACATTCCCATCCCTCAGCGCCAAACGGACCTTCCCTTCTTGCTTGCCATCGAAGATGTGTTTTCCATTACCGGTCGTGGGACTGTGGCCACCGGAAGGGTTGAGAGAGGGACTATTAAGGTTGGTGAAACTGTTGAAATTGTCGGTGTGAGGGAGACTAGGAGCACTACTGTCACTGGTGTGGAGATGTTCCAGAAGATTCTAGATGAGGCAATGGCCGGTGATAATGTGGGGTTGTTGCTTAGGGGTATTCAGAAGGTTGATATTCAAAGAGGGATGGTGTTGGCTAAGCCGGGGACTATTACCCCACACACTAAGTTTTCTGCCATTGTGTATGTTTTAAAGAAGGAAGAAGGAGGGAGGCACTCACCATTCTTTGCCGGGTACCGACCACAGTTTTACATGAGGACCACTGATGTGACCGGGAAAGTGACGTCGATTATGAATGATAAGGATGAGGAGTCCAAGATGGTGATGCCAGGGGACAGGGTTAAGATGGTGGTGGAGCTTATAGTACCCGTGGCTTGTGAGCAAGGGATGAGGTTTGCTATTCGGGAAGGAGGGAAAACTGTTGGAGCTGGTGTCATCCAATCCATCATTGAGTGA 1458 0.5453 MAIYSVAAAASSSKLIYPHAPPPPPSSSFSTSTSLFTTATHFSSSFLKPSTILHLTPSSSSTLTTTTHCRRSLAIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDEVPIISGSALLALEALMANPAIKRGDNDWVDKIYALMDAVDSYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRVERGTIKVGETVEIVGVRETRSTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKVDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211521g00017 485 CDD EFTU_III 386 480 - -
Stsc211521g00017 485 Gene3D Translation factors 292 420 - -
Stsc211521g00017 485 Gene3D - 78 289 IPR027417 -
Stsc211521g00017 485 Hamap Elongation factor Tu [tuf]. 77 485 IPR004541 GO:0003746|GO:0005525|GO:0006414
Stsc211521g00017 485 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 384 484 IPR009001 -
Stsc211521g00017 485 Pfam Elongation factor Tu C-terminal domain 384 483 IPR004160 -
Stsc211521g00017 485 Pfam Elongation factor Tu domain 2 311 379 IPR004161 GO:0005525
Stsc211521g00017 485 SUPERFAMILY Translation proteins 291 387 IPR009000 -
Stsc211521g00017 485 PANTHER ELONGATION FACTOR TU-RELATED 73 484 - -
Stsc211521g00017 485 PRINTS GTP-binding elongation factor signature 207 216 IPR000795 GO:0003924|GO:0005525
Stsc211521g00017 485 PRINTS GTP-binding elongation factor signature 154 164 IPR000795 GO:0003924|GO:0005525
Stsc211521g00017 485 PRINTS GTP-binding elongation factor signature 90 103 IPR000795 GO:0003924|GO:0005525
Stsc211521g00017 485 PRINTS GTP-binding elongation factor signature 170 181 IPR000795 GO:0003924|GO:0005525
Stsc211521g00017 485 PRINTS GTP-binding elongation factor signature 134 142 IPR000795 GO:0003924|GO:0005525
Stsc211521g00017 485 NCBIfam elongation factor Tu 78 485 IPR004541 GO:0003746|GO:0005525|GO:0006414
Stsc211521g00017 485 NCBIfam small GTP-binding protein domain 89 224 IPR005225 GO:0005525
Stsc211521g00017 485 FunFam Elongation factor Tu 424 484 - -
Stsc211521g00017 485 Gene3D Translation factors 424 484 - -
Stsc211521g00017 485 Pfam Elongation factor Tu GTP binding domain 86 287 IPR000795 GO:0003924|GO:0005525
Stsc211521g00017 485 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 86 290 IPR000795 GO:0003924|GO:0005525
Stsc211521g00017 485 CDD EF_Tu 87 289 IPR041709 -
Stsc211521g00017 485 FunFam Elongation factor Tu 77 289 - -
Stsc211521g00017 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 312 IPR027417 -
Stsc211521g00017 485 CDD EFTU_II 297 383 IPR033720 -
Stsc211521g00017 485 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 127 142 IPR031157 -
Stsc211521g00017 485 FunFam Elongation factor Tu 292 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211521g00017 Stsc-Chr211521 115494 128266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211521g00017 84 483 Eukaryotic Initiation Factors Gene Family AT5G60390 30.700 6.03e-48 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211521g00017 K02358 - qsa:O6P43_022648 785.023