Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211521g00009 ATGGAGATGGAGCGCGTCTTTGGATTCCCCCAACCCCATATGGATCGACGACCGAGAAAGAGAGCTAGATTAGGCTGGGATATCCCTGAGGCCCCTAAGGCTCAGGTAGGATTATTTTGTGGACAAGAGGTTGGAACTATTTCAAGCTATGCTCCTTCTTGGGGTCCCTCAGAACATACCAGTAGTTCTCTTTCTGTTAAGGGTGTTGCTCGAAATGGTTCTCCCCCTCAGCGAGATGATGACAAAGATGGGCATTACATTTTTGAGCTTGGAGAAAATTTAACTTCTCGCTACAAGATTCATAGCAAAATGGGTGAAGGAACTTTTGGACAGGTCTTAGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATAAAAATTGTTCGCGGGGTAAAGAAGTATCGGGAAGCAGCCATGATCGAAATCGAGGTGCTGCAGCAGCTTGGCAAACACGATAAAGGAGGCAGTCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTCTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCATTCATGCATGATTTGCGAATGATCCATACTGACCTGAAGCCCGAAAACATACTTCTAGTTTCTCCCGAGTATGTTAAAGTTCCTGATTACAAGAGTTCATCAAGATCACCAAGTTCTTATTTCAAGAGGGTGCCCAAGTCAAGTGCTATAAAGGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAAGATCAGAGTTACATTGTATCAACTCGACACTACAGGGCACCTGAAGTTATCATTGGACTGGGCTGGAGTTACCCATGTGATATATGGAGTGTGGGGTGTATATTGGTTGAGTTGTGCACGGGTGAAGCTTTGTTTCAGACCCATGAGAATTTAGAACACCTTGCGATGATGGAGAGGGTGCTTGGACCATTACCTCAACACATGCTGAAGAGAGCAGACCGACATGCCGAGAAGTATGTTAGAAGAGGTAGATTAGACTGGCCAGAGGGTGCAACCTCCAGGGAGAGTATTAAAGCTGTAATGAAGCTTCCTAGGTTACAGAACCTTATCATGCAGCATGTTGATCACTCAGCTGGCGATCTTATACACCTCTTGCAGGGGTTGCTTAGATATGACCCCTCAGAAAGACTTACAGCCAGGGAAGCTCTAAGACATTCTTTCTTCATGAGAGATTACCTTAGGAGATGA 1293 0.4455 MEMERVFGFPQPHMDRRPRKRARLGWDIPEAPKAQVGLFCGQEVGTISSYAPSWGPSEHTSSSLSVKGVARNGSPPQRDDDKDGHYIFELGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGVKKYREAAMIEIEVLQQLGKHDKGGSRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECVAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKSSSRSPSSYFKRVPKSSAIKVIDFGSTTYEREDQSYIVSTRHYRAPEVIIGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRADRHAEKYVRRGRLDWPEGATSRESIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPSERLTAREALRHSFFMRDYLRR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211521g00009 430 MobiDBLite consensus disorder prediction 53 84 - -
Stsc211521g00009 430 Pfam Protein kinase domain 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211521g00009 430 SUPERFAMILY Protein kinase-like (PK-like) 85 426 IPR011009 -
Stsc211521g00009 430 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Stsc211521g00009 430 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 425 - -
Stsc211521g00009 430 Gene3D Transferase(Phosphotransferase) domain 1 152 423 - -
Stsc211521g00009 430 FunFam Serine/threonine-protein kinase AFC2 85 178 - -
Stsc211521g00009 430 CDD PKc_CLK 85 423 - -
Stsc211521g00009 430 MobiDBLite consensus disorder prediction 53 70 - -
Stsc211521g00009 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Stsc211521g00009 430 ProSiteProfiles Protein kinase domain profile. 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211521g00009 430 SMART serkin_6 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211521g00009 430 FunFam Serine/threonine-protein kinase AFC2 174 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211521g00009 Stsc-Chr211521 68006 71942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211521g00009 103 423 Core Cell Cycle Gene Families AT1G76540 25.373 2.61e-26 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Stsc211521g00009 Pkinase 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211521g00009 K08287 - gmx:100804452 830.861