Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211521g00006 ATGCAAATTCTAGTTCTCATTATCCTTTCCATTTTGTCCCTGCTAATCAAATGGTCCTATTCAAATTATTATTCATCATCCTCATCAAGCAACCAAAACTCACCCCCTTCACCTCCAAAATTGGCAATAATAGGACATCTTCATAAACTAGGCTTGTACCCTCATCGCACCCTTTACTCTCTAGCCAAAAGATATGGCCCCTTGATGCTGCTCCATTTTGGGAAGCTGCCAGTTCTGGTGGTTTCATCCGCTGAAGGTGCACGTGAGATCATGAAAACCCATGATCGTGTATTTGCAAGCAGACCCCAAAGTAAACTCTACGATATACTTCTATACGGTTGCAAAGATATGTCAACAGCGCCATATGGTGAGTACTGGAGGCAAATAAGGAGCGTGAGCGTCTTGCATCTGCTTAGTGTGAAAAGGGTTCAATCACTTGGCAATTTGAGATGGGAGGAAACTGCCATACTGATGGAAAAGATAAGACACTCTTCTTCTCTGTCCTTACCGGTGAATTTGAGCGAGTTGTTTTCCAAATTCACCAATGATATAATTTGTAGGGTCAGTTTGGGGAGAAAATATAGTGAAGAGAAGGAGTTGAAGGAGTTGATGAGGGAGTTTACAGAGCTTCTTGGTACTTTTGTTATAGGGGATTTTGTTCCTTGGCTTGATTGGTTAACTCGTATGTCTGGAGTGTATGGTAGAGCGTATAGAGTGGCTTCACAATATGATAATTTTTTGGAGCAAGTACTTGACGAGCATATCAATCGACGCAAAGAAATTGACTCTAATGATGATGATTTTGTGGACGTCTTGCTTTCATTACAGGGGATGATAGACAGAACTGCCATGAAGGCTTTGCTATTGGATATGTTTTCCGGTGGTACGGACACTACATCAACAGTTGTAGAGTGGGCAATGACAGAACTCTTAAGGCATCCAACTGTGATGAAGAAACTTCAACAAGAAACCAGGAACGTGGTTGGTGACACAAAATACATAACGGAAGAGAATTTGGCTCACATGAACTACTTAAAAGCTGTGATCAAAGAAACTATGCGCCTACATCCCCCAATTCCATTACTAATCCCACGAGAAAGCATGCAAGATATGAAATTAGAGGGTTACAACATTGCATGTGGAACAAGAGTAATTGTGAATGCATGGGCAATTGCAAGAGATCCAGCATATTGGGACCAACCTGAAGAGTTCATACCTGAGAGGTTCTTGAATAGTTCAATTGATGTGAAAGGAAATGATTTCGAGTTGATTCCGTTTGGTGCAGGGAGGAGAGGATGCCCTGGAATAGTGTTTGCTATGGCTGTAAATGAACTTGTGCTGGCCAACCTTCTTCACCAATTTGATTGGAGATTACCATCAAATGAGGGCAATAACTACTTGGATATGTCAGAAACAGTTGGAATAACCATGCATAGAAAGACTCCCCTTGTAGCAATTGCAACCCCAAGGAAATAA 1476 0.4153 MQILVLIILSILSLLIKWSYSNYYSSSSSSNQNSPPSPPKLAIIGHLHKLGLYPHRTLYSLAKRYGPLMLLHFGKLPVLVVSSAEGAREIMKTHDRVFASRPQSKLYDILLYGCKDMSTAPYGEYWRQIRSVSVLHLLSVKRVQSLGNLRWEETAILMEKIRHSSSLSLPVNLSELFSKFTNDIICRVSLGRKYSEEKELKELMREFTELLGTFVIGDFVPWLDWLTRMSGVYGRAYRVASQYDNFLEQVLDEHINRRKEIDSNDDDFVDVLLSLQGMIDRTAMKALLLDMFSGGTDTTSTVVEWAMTELLRHPTVMKKLQQETRNVVGDTKYITEENLAHMNYLKAVIKETMRLHPPIPLLIPRESMQDMKLEGYNIACGTRVIVNAWAIARDPAYWDQPEEFIPERFLNSSIDVKGNDFELIPFGAGRRGCPGIVFAMAVNELVLANLLHQFDWRLPSNEGNNYLDMSETVGITMHRKTPLVAIATPRK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211521g00006 491 PRINTS P450 superfamily signature 424 433 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00006 491 PRINTS P450 superfamily signature 294 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00006 491 PRINTS P450 superfamily signature 347 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00006 491 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 426 435 IPR017972 GO:0005506|GO:0016705
Stsc211521g00006 491 Gene3D Cytochrome P450 24 488 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00006 491 PANTHER CYTOCHROME P450 71B11-RELATED 13 488 - -
Stsc211521g00006 491 FunFam Cytochrome P450 83B1 22 486 - -
Stsc211521g00006 491 SUPERFAMILY Cytochrome P450 35 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00006 491 Pfam Cytochrome P450 35 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00006 491 CDD CYP71-like 64 483 - -
Stsc211521g00006 491 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00006 491 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00006 491 PRINTS E-class P450 group I signature 283 300 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00006 491 PRINTS E-class P450 group I signature 423 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00006 491 PRINTS E-class P450 group I signature 387 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00006 491 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00006 491 PRINTS E-class P450 group I signature 346 364 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00006 491 PRINTS E-class P450 group I signature 433 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00006 491 PRINTS E-class P450 group I signature 303 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211521g00006 Stsc-Chr211521 34941 37331 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211521g00006 31 488 Cytochrome P450 AT3G48270 53.747 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211521g00006 - - gmx:100806940 608.986