Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211521g00005 ATGCAAATTCTAGTACTCATTATCCTTCCCATCCTTTCCATTTTGTTACTGCTAATCAAATGGTGGATTTCAAATTATTATTCATCATCCTCATCAAGCAACCAAAACAAACCCCCTTCACCCCCAAAATCGCCAATAATAGGACATCTTCATAAACTAGGCTTGTACCCTCATCGCACCCTTCAATCTCTAGCCAAAACATATGGCCCCTTGATGCTGCTCCATTTTGGGAAGGTTCCAGTTCTGGTGGTTTCATCCGCTGAAGGTGCACGTGAGATCATGAAAACCCATGATCGTGTATTTGCAAGCAGACCCCAAAGTAAACTCTATGATATACTTCTATACAGTCCCAAAGATATATCAACAGCACCATATGGTGAGTACTGGAGACAAGTAAGGAGCATCAGCATCTTGCATCTGCTTAGTGCCAAAAAGGTTCAATCATTTCGCGCCATCAGATGGGAGGAAACTGCCATAATGATGGAAAAGATACGGCACTCTTCTTCTTTGTCCGCACCGGTGAATTTGAGCGAGTTGTTTTCCAAATTCACCAATGATATAATTTGTAGAATCACTTTAGGTAGAAAATACAGTGAAGAGAAGGAGTTCAAGGAGTTGTTGATGGAGTTTACAGAGCTTCTTGGTACTTTTGTTATAGGGGACTTTGTTCCTTGGCTTGATTGGTTAACTCGCATGTCTGGAGTGTATTCTAGAGCATATAAAGTGATTGCCCAATTTGATAATTTCTTGGACCAATTACTTGACGAGCATATCATTCGACAGCAAGAAACCAGGAGTACTGAGAATGTTCATTCAGACACTGAAAGCCATACTGACTATGATTTTGCGGATGTGTTGCTTACATTACAAGGAACAGACAGAACTGTAATGAAGGCTTTGTTATTGGATGTGTTTGCTGGTGGTACGGACACTGTATCAACAATGGTAGAGTGGACAATGACAGAACTGATAAGGCATCCAACTGTGATTAAGAAAGTTCAAGATGAAATGAGAAACATTGTTGGTGACAAAAAATACATAACTGAAGAGAATTTGGCTAACATGAAATACTTAAAAGCTGTGATTAAAGAAAGTCTGCGGCTACATCCCCCAATTCCATTACTAGTCCCACGAGAAAGCATGCAAGATATGAAATTAGAGGGTTACAACATTGCATGTGGAACAAGAGTAATTGTGAATGCATGGGCAATTGCAAGAGATCCAGCATATTGGGACCAACCTGAAGAGTTCAAACCTGAGAGGTTCTTGAACAGTTCAATTGATGTGAAGGGAAATGATTTCCAATTGATTCCGTTTGGTGCAGGGAGAAGAGGATGCCCTGGAATAGTGTTTACTTTGGCTGTCAATGAACTTGTGCTGGCCAACCTGCTTCACCAATTTGATTGGAGATTGCCATCAAATGAGGGCGATAACTTGGATATGTCAGAAACAATTGGAATAACCATGCATAGAAAGACTCCCCTGGTGGCAATTGCAACCCCAAGGGAACAAAGAGAACCAAAAAAAAAAGTTTAA 1536 0.4056 MQILVLIILPILSILLLLIKWWISNYYSSSSSSNQNKPPSPPKSPIIGHLHKLGLYPHRTLQSLAKTYGPLMLLHFGKVPVLVVSSAEGAREIMKTHDRVFASRPQSKLYDILLYSPKDISTAPYGEYWRQVRSISILHLLSAKKVQSFRAIRWEETAIMMEKIRHSSSLSAPVNLSELFSKFTNDIICRITLGRKYSEEKEFKELLMEFTELLGTFVIGDFVPWLDWLTRMSGVYSRAYKVIAQFDNFLDQLLDEHIIRQQETRSTENVHSDTESHTDYDFADVLLTLQGTDRTVMKALLLDVFAGGTDTVSTMVEWTMTELIRHPTVIKKVQDEMRNIVGDKKYITEENLANMKYLKAVIKESLRLHPPIPLLVPRESMQDMKLEGYNIACGTRVIVNAWAIARDPAYWDQPEEFKPERFLNSSIDVKGNDFQLIPFGAGRRGCPGIVFTLAVNELVLANLLHQFDWRLPSNEGDNLDMSETIGITMHRKTPLVAIATPREQREPKKKV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211521g00005 511 FunFam Cytochrome P450 83B1 25 498 - -
Stsc211521g00005 511 CDD CYP71-like 67 495 - -
Stsc211521g00005 511 Gene3D Cytochrome P450 23 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00005 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 439 448 IPR017972 GO:0005506|GO:0016705
Stsc211521g00005 511 SUPERFAMILY Cytochrome P450 38 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00005 511 PANTHER CYTOCHROME P450 71B11-RELATED 17 500 - -
Stsc211521g00005 511 PRINTS E-class P450 group I signature 316 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00005 511 PRINTS E-class P450 group I signature 296 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00005 511 PRINTS E-class P450 group I signature 436 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00005 511 PRINTS E-class P450 group I signature 400 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00005 511 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00005 511 PRINTS E-class P450 group I signature 359 377 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00005 511 PRINTS E-class P450 group I signature 89 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00005 511 PRINTS E-class P450 group I signature 183 201 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00005 511 PRINTS E-class P450 group I signature 446 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00005 511 PRINTS P450 superfamily signature 437 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00005 511 PRINTS P450 superfamily signature 360 371 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00005 511 PRINTS P450 superfamily signature 307 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00005 511 Pfam Cytochrome P450 38 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211521g00005 Stsc-Chr211521 28802 30624 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211521g00005 35 500 Cytochrome P450 AT3G48270 52.101 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211521g00005 - - gmx:100806940 585.104