Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211521g00004 ATGATTATCTCTTATGCACTCTTTGTTCTCCTTACACTTCTCTTCCTCATCTTCACATTTAGAAAATCAGATCTAAAAAGAAATAATCTTCCTCCTGGCCCATGGAGATTACCATTCATCGGCAACCTTCACCAAGTTGGGGAGCTCCCTCATCGATCCCTTCAACAATTGTCAAGTATTCATGGACCACTCATGTTCTTGAAGCTGGGTTCTGTCCCTACTTTGGTGGTCTCCTCCGCCGAGATAGCCAAAGAGATCTTCAAGAACCATGACTTCGCTTTCTCCGGCCGCCCCAAGCTGTATGCCGCGAACCGTTTGGGATATAACGGTTCAGCTATTACTTTCACTCCTTATGGTGACTACTGGAAGGAGATAAGGAAAATTATGATGTTGGAGTTGCTGAGTGCCAAGAGGGTTCAATCTTTTCAAGCTGTGAGGCTTGAAGAGGTTCAAAATCTTATCCATTCCATAGCTCTTTCCAGTGGTACTCCTGTTAACCTAAGCCAGTTGACGCTTTCTCTTACAAATAATGTTGTTTGTCGGATTGCTTTCGGCACAAGATTTGGGGGTCCAAGTAGTAAGTTCTATGAGGTGGTTAGGGAAACACAAGAGTTGTTGGGAGGGTTCTGTTTGGCTGACTTCTTTCCTTGGTTGTGGTGGCTCAACAAGTTCAATGGTTACGAGAGTAGGCTAGAGAAGAACTTCAAAGAGTTGGATAACTTTTATGACAAAGTGATTGAGGATCATGCTGCTCATAATGATGATTCTAAGAGGCTTGGAGCAATGGAGCAGCATGATGAAGATCTTGTTCATGTTCTTCTCCAACTCCAAAAGGATTCAAATCAAGCGATAGCCCTCAACGATGTAAAAATCAAGGGTGTTCTAACAGACATTTTCATAGCAGGGACCGACACGGCATCCGCCACAATGATATGGACAATGTCGGAGCTGGTAAAGAACCCAGACAAAATGGAAATAGCACAAAAAGAGGTAAGAGAATTAGTACTCTTGAAGGAGAAAAAAGGTATGGTGGAAGAGAGTGACCTTCCAATGCTTCCATACCTCAAATCAGTGGTTAAGGAAGCGCTAAGAATCCATCCTCCAGCACCACTCCTCGTTCCAAGAGAGACCATCCAAACTTGCACCATCAAAGGCTATGAAGTCCCTTCCGGAACGAGGGTCTTCATCAACGCCAAAGCCATAGCAATGGATCCAACTTGTTGGGAGAATCCGAACGAGTTCACTCCGGAGCGGTTCCTCTGTAGTCCAGTTGATTACTTCAAAGGGCAACATGTTGAGATGTTGCCTTTTGGAGCTGGACGGAGGGGCTGCCCTGGAGTGAACTTCGCCATGCCGTTGATTGAGCTTTCTCTGGCGAATCTTTTGCTTTGTTTTGATTGGAAACTGCCAAACGGAATGCGAAGGGATGAAGTTGACATGCAAGAAGCAATTGGCCTTACAATGCACAAGAAATCTCCTCTTTGTCTCATACCCTCTCCCTTCTTTCAGTAA 1512 0.4478 MIISYALFVLLTLLFLIFTFRKSDLKRNNLPPGPWRLPFIGNLHQVGELPHRSLQQLSSIHGPLMFLKLGSVPTLVVSSAEIAKEIFKNHDFAFSGRPKLYAANRLGYNGSAITFTPYGDYWKEIRKIMMLELLSAKRVQSFQAVRLEEVQNLIHSIALSSGTPVNLSQLTLSLTNNVVCRIAFGTRFGGPSSKFYEVVRETQELLGGFCLADFFPWLWWLNKFNGYESRLEKNFKELDNFYDKVIEDHAAHNDDSKRLGAMEQHDEDLVHVLLQLQKDSNQAIALNDVKIKGVLTDIFIAGTDTASATMIWTMSELVKNPDKMEIAQKEVRELVLLKEKKGMVEESDLPMLPYLKSVVKEALRIHPPAPLLVPRETIQTCTIKGYEVPSGTRVFINAKAIAMDPTCWENPNEFTPERFLCSPVDYFKGQHVEMLPFGAGRRGCPGVNFAMPLIELSLANLLLCFDWKLPNGMRRDEVDMQEAIGLTMHKKSPLCLIPSPFFQ 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211521g00004 503 CDD CYP71-like 61 494 - -
Stsc211521g00004 503 Pfam Cytochrome P450 31 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00004 503 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 437 446 IPR017972 GO:0005506|GO:0016705
Stsc211521g00004 503 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00004 503 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00004 503 PRINTS P450 superfamily signature 435 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00004 503 PANTHER CYTOCHROME P450 71B11-RELATED 14 499 - -
Stsc211521g00004 503 SUPERFAMILY Cytochrome P450 31 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00004 503 Gene3D Cytochrome P450 20 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00004 503 PRINTS E-class P450 group I signature 174 192 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00004 503 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00004 503 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00004 503 PRINTS E-class P450 group I signature 434 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00004 503 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00004 503 PRINTS E-class P450 group I signature 82 103 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00004 503 PRINTS E-class P450 group I signature 444 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00004 503 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00004 503 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00004 503 FunFam Cytochrome P450 99A2 20 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211521g00004 Stsc-Chr211521 15673 18251 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211521g00004 10 502 Cytochrome P450 AT3G26300 44.094 1.81e-143 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211521g00004 K20617 - gmx:100806157 634.409