Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211521g00001 ATGCAAATTCTTCTCATCATCTTGCCAATCTTTTCCGTTTTATTTCTGCTAATAAAATGGTATTCCACAGGCAGAAAAAGCTCACTCCCTTCTCCGCTGAAATTCCCAATAATAGGAAATCTCCACCAACTAGGTTTGTATCCTCATCGCACCCTCCAATCTCTGGCCAAAAGATATGGCCCCTTGATGCTGATCCATCTTGGGAGGGTGCCGGTTCTGGTGGTCTCTTCCGCTGAAGGTGCACGTGAGATCATGAAAACCCATGATCTTGTATTTGCAAGCAGACCCCAAAGGAAATTGTTCGACATACTTGTATATGGTTCCAAAGATGTGTCAACAGCCCCATATGGTGAGTACTGGAGGCAATTAAGGAGCATCTCTTTGTTGCATCTTCTCACTGTGAAAAGGGTTCAATCATTTCGCACCGTGAGAGAGGAGGAAACTCAAATCATGATGGAAGAAATCAAGCATTGTTCTTCGTCCTCTGTTCCAATTAATTTGAGCCAATTATTCTCCCTGATCACCACTGACATACTTTGCAAGGTCACTTTTGGAAGAAAATATGGTGGAAAAAGTAGGAGGGAGTTTAAGGAGTTGTTCGTGGAGTTTACTGAACTTCTTGGTAGCTTTGTTATTGGAGAGTTTGTGCCTTGGCTTGATTGGTTGACCAGTGTTTCTGGGTTGTATACTAGAGCCAACAGAGTAGCTGCAAGGTTTGATAAATTCTTGGAGGAAGTAGTTGATTACCATGTGAATCGATATCAAGATGATGATGATCATGTTACCAGCAATGTGGATCGTGTAGGATCATCATCAGATGCTGAAGGCCACAATGATTTTGTTGATGCTTTGCTTTCTTTCCAAAGGACAAATGCAACTGGATTTCCAATTGATAGGACAGCGATTAAGTGTTTGATGTTGGATGTATTTGTTGCAGGTGCAGACAATATATCTACCATCTTAGAGTGGACAATGACAGAGCTCTTAAGGCACCCAATGGTGATGAAAAAAGTGCAAGACGAAGCGAAAAATGTGGTGGGTGACAGAACAATCATAACCGAAGATGATTTGGTTCACATGCATTATTTAAAAGCCGTGGTGAAAGAAGCTCTTCGACTACACCCACCAATTCCGTTGCTAGTCCGGCGAGAAAGCACGCAAGATATCAAACTGCAAGATTATAAGATTGCTTCCGGAACACAAGTAATTGTGAATGCATGGGCAATAGCAATGGATCCTAAGTATTGGGACCAACCCAAAGAGTTCGTACCGCAGAGGTTCATGAATGGTTATATAGACGTGAAAGGGAATGATTTTGAATTGATTCCGTTCGGAGCCGGGAGAAGGGGCTGCCCCGGAACAATGTTTGCTATGGCTATCATTGAGATTGTGCTAGCCAACCTCCTTCACCAATTTGAATGGGCATTACCAGAGGGTGTGGACAATTTGGACATGTCTGAAACAGTTGGATTAACCATTTATAGAAAAGTTCCTCTCGTAGCCCTTGCAAGCCCAAAGAAATAA 1524 0.4259 MQILLIILPIFSVLFLLIKWYSTGRKSSLPSPLKFPIIGNLHQLGLYPHRTLQSLAKRYGPLMLIHLGRVPVLVVSSAEGAREIMKTHDLVFASRPQRKLFDILVYGSKDVSTAPYGEYWRQLRSISLLHLLTVKRVQSFRTVREEETQIMMEEIKHCSSSSVPINLSQLFSLITTDILCKVTFGRKYGGKSRREFKELFVEFTELLGSFVIGEFVPWLDWLTSVSGLYTRANRVAARFDKFLEEVVDYHVNRYQDDDDHVTSNVDRVGSSSDAEGHNDFVDALLSFQRTNATGFPIDRTAIKCLMLDVFVAGADNISTILEWTMTELLRHPMVMKKVQDEAKNVVGDRTIITEDDLVHMHYLKAVVKEALRLHPPIPLLVRRESTQDIKLQDYKIASGTQVIVNAWAIAMDPKYWDQPKEFVPQRFMNGYIDVKGNDFELIPFGAGRRGCPGTMFAMAIIEIVLANLLHQFEWALPEGVDNLDMSETVGLTIYRKVPLVALASPKK 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211521g00001 507 PANTHER CYTOCHROME P450 71B11-RELATED 18 504 - -
Stsc211521g00001 507 FunFam Cytochrome P450 83B1 16 502 - -
Stsc211521g00001 507 SUPERFAMILY Cytochrome P450 30 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00001 507 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 444 453 IPR017972 GO:0005506|GO:0016705
Stsc211521g00001 507 CDD CYP71-like 58 499 - -
Stsc211521g00001 507 Gene3D Cytochrome P450 18 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00001 507 PRINTS E-class P450 group I signature 451 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00001 507 PRINTS E-class P450 group I signature 56 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00001 507 PRINTS E-class P450 group I signature 80 101 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00001 507 PRINTS E-class P450 group I signature 174 192 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00001 507 PRINTS E-class P450 group I signature 321 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00001 507 PRINTS E-class P450 group I signature 301 318 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00001 507 PRINTS E-class P450 group I signature 364 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00001 507 PRINTS E-class P450 group I signature 405 429 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00001 507 PRINTS E-class P450 group I signature 441 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00001 507 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00001 507 PRINTS P450 superfamily signature 451 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00001 507 PRINTS P450 superfamily signature 312 329 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00001 507 PRINTS P450 superfamily signature 442 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211521g00001 507 Pfam Cytochrome P450 30 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211521g00001 Stsc-Chr211521 1281 4463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211521g00001 25 504 Cytochrome P450 AT3G48270 49.896 4.83e-177 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211521g00001 - - gmx:100806940 617.076